View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19191_low_6 (Length: 338)

Name: NF19191_low_6
Description: NF19191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19191_low_6
NF19191_low_6
[»] chr2 (12 HSPs)
chr2 (1-313)||(2321586-2321920)
chr2 (129-313)||(2294271-2294464)
chr2 (155-313)||(2303884-2304046)
chr2 (250-313)||(2310602-2310665)
chr2 (20-109)||(2294512-2294601)
chr2 (39-109)||(2339306-2339375)
chr2 (251-313)||(2351460-2351522)
chr2 (250-305)||(2327447-2327502)
chr2 (72-109)||(2304241-2304278)
chr2 (37-109)||(2331412-2331484)
chr2 (126-231)||(2327562-2327664)
chr2 (269-313)||(2331154-2331198)
[»] chr8 (1 HSPs)
chr8 (265-305)||(41127477-41127517)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 2321920 - 2321586
Alignment:
Q  1 actttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321920 actttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagat 2321821  T
Q  101 atataagaagtaagggatc--attgtat--------------tgtatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgt 184  Q
    ||||||||||||||| ||   | |||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2321820 atataagaagtaaggcatatgaatgtatgcataagggatcattgtatgaaacaaaatccgaccatatgagaaatccacatataatattcccctgttgtgt 2321721  T
Q  185 tatgacattctcaagcagagaatctagagtggttcacacaacaacattacatactccaaatcgttacacataac---------ctataccctaggagaaa 275  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||         |||||||||||||||||    
T  2321720 tatgacattctcaagcagagaatctagagtggttcacac---aacattacatactccaaatcgttacacataacacacataatctataccctaggagaaa 2321624  T
Q  276 tatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2321623 tatgaacttgcaatggatttttcatcaccatagtgaat 2321586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 2294464 - 2294271
Alignment:
Q  129 tatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaa 228  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2294464 tatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagcagagaatctagggtggttcacacaacaa 2294365  T
Q  229 cattacatactccaaatcgtt---------acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    |||||||||||||| ||||||         |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2294364 cattacatactccacatcgttacatataacacacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatggtgaat 2294271  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 313
Target Start/End: Complemental strand, 2304046 - 2303884
Alignment:
Q  155 aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaacattacat-----actccaaatcgtt 249  Q
    |||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||  |||||   ||     | | || ||        
T  2304046 aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacacaggaacatacgatttatcattacacat-aaa 2303948  T
Q  250 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2303947 aaacataatctatatcctaggagaaatatgaacttgcaatggatttttcatcaccatattgaat 2303884  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 2310665 - 2310602
Alignment:
Q  250 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2310665 acacataatctatatcctaggagaaatatgaacttgcactggatttttcatcaccatagtgaat 2310602  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 2294601 - 2294512
Alignment:
Q  20 aagatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttatacaagaaacaagatatataagaa 109  Q
    |||||||||| |||| |||| |||||||||||||||||||||||||||||| | | |||||  |||||||| |||||||||||||||||||    
T  2294601 aagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaa 2294512  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 2339375 - 2339306
Alignment:
Q  39 attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 109  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||| |||||||||||||    
T  2339375 attgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaa 2339306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 2351522 - 2351460
Alignment:
Q  251 cacataacctataccctaggagaaatatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    ||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  2351522 cacataaactatatcctaggagaaatacgaacttgcaatggatttttcatcaccacagtgaat 2351460  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 2327502 - 2327447
Alignment:
Q  250 acacataacctataccctaggagaaatatgaacttgcaatggatttttcatcacca 305  Q
    |||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||    
T  2327502 acacataatctatattctatgagaaatatgaacttgcaatggatttttcatcacca 2327447  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 2304278 - 2304241
Alignment:
Q  72 catgttttattttatacaagaaacaagatatataagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304278 catgttttattttatacaagaaacaagatatataagaa 2304241  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 2331484 - 2331412
Alignment:
Q  37 acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 109  Q
    |||||||| |||||||| ||| |||||| | ||  |||||||||||||||| |||||||||||||| ||||||    
T  2331484 acattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataagaaacaagatatgtaagaa 2331412  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 2327664 - 2327562
Alignment:
Q  126 ttgtatgaaacaaaatcccacca-tatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 224  Q
    ||||||||| |||||||  |||| | ||| ||||| |||||||||||||| ||||   |||||||||||  |||| |||||||||||  |||||||||||    
T  2327664 ttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgt---gttatgacattgccaag-agagaatctaggatggttcacaca 2327569  T
Q  225 acaacat 231  Q
    |||||||    
T  2327568 acaacat 2327562  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 2331198 - 2331154
Alignment:
Q  269 ggagaaatatgaacttgcaatggatttttcatcaccatagtgaat 313  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||    
T  2331198 ggagaaatatgagcctgcaatggatttttcatgaccatagtgaat 2331154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 41127517 - 41127477
Alignment:
Q  265 cctaggagaaatatgaacttgcaatggatttttcatcacca 305  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  41127517 cctaggagaaatatgaacttgcagtggatttttcataacca 41127477  T

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