View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_108 (Length: 245)

Name: NF19192_high_108
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_108
NF19192_high_108
[»] chr2 (2 HSPs)
chr2 (1-245)||(41211240-41211484)
chr2 (1-245)||(41201191-41201435)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41211484 - 41211240
Alignment:
Q  1 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41211484 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 41211385  T
Q  101 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41211384 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 41211285  T
Q  201 ggataacctgaatcaccaattatatattcccttatctctgctcct 245  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  41211284 ggataacctgaatcaccaattatatattcccttatttctgatcct 41211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41201435 - 41201191
Alignment:
Q  1 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 100  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41201435 aaacaagaataatccttggcaaacgatgtttgtccggccgccacatatttccacgaatgattctccacatctccttaagccttgtcaatgctctttgtgc 41201336  T
Q  101 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 200  Q
    ||||||||| ||| | ||||||||||| ||||| | || |||||  ||||||||||||| ||||||||||| |||||| |||||||| ||||||||| ||    
T  41201335 caccatccttgttgccaaatgcagcttgttaaaatgagtttttgcctctgactctaagagttctttctctttataaggaacaacaagataaggcaataga 41201236  T
Q  201 ggataacctgaatcaccaattatatattcccttatctctgctcct 245  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  41201235 ggataacctgaatcaccaattatatattcccttatttctgatcct 41201191  T

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