View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_high_110 (Length: 243)
Name: NF19192_high_110
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_110 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 44449523 - 44449750
Alignment:
| Q |
1 |
aatgctgtgcaagtaaagtatgtttggtttgcaaatgaaaagcagtgacctcttggtaatgcggtgctacttcaaacatggcaggaaggtccctccatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44449523 |
aatgctgtgcaagtaaagtatgtttgctttgcaaatgaaaagcagtgacctcttggtaatgcggtgctacttcaaacatggcaggaaggtccctccatgt |
44449622 |
T |
|
| Q |
101 |
gataaattagtagggcaacccccaacatgtgaatgaatcaagtcatctttacgatacacgtatctcttcccaaatttagctcatcaatcaattccctagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44449623 |
gataaattagtagggcaacccccaacatgtgaatgaatcaagtcatctttacgatacacgtatctcttcccaaatttagctcatcaatcgattccctagt |
44449722 |
T |
|
| Q |
201 |
ttcacatccacgaatctatgtgaatact |
228 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
44449723 |
ttcacatccacgaatctacgtgaatact |
44449750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University