View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_high_111 (Length: 242)
Name: NF19192_high_111
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_111 |
 | |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33867823 - 33868061
Alignment:
| Q |
1 |
tttatgtcacttgggctgcttaaattgtgtttgttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867823 |
tttatgtcacttgggctgcttaaattgtgtttgttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaa |
33867922 |
T |
|
| Q |
101 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33867923 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatgacgtcgttaaaatgaaaaagt |
33868022 |
T |
|
| Q |
201 |
ctggcacaatcaaacgaagaagcaacaatttcagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33868023 |
ctggcacaatcaaacgaagaagcaacaatttcagttcat |
33868061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 121 - 236
Target Start/End: Complemental strand, 29266228 - 29266113
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |
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| T |
29266228 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttgaaatgaaaaggtctggcacaatcaaacgaata |
29266129 |
T |
|
| Q |
221 |
agcaacaatttcagtt |
236 |
Q |
| |
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| |||||||||||||| |
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| T |
29266128 |
accaacaatttcagtt |
29266113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5770226 - 5769988
Alignment:
| Q |
1 |
tttatgtcacttgggctgcttaaattgtgtttgttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5770226 |
tttatgtcacttgggctgcttaaattgtgtttgctattgatatatatggtactgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaa |
5770127 |
T |
|
| Q |
101 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770126 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagt |
5770027 |
T |
|
| Q |
201 |
ctggcacaatcaaacgaagaagcaacaatttcagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5770026 |
ctggcacaatcaaacgaagaagcaacaatttcagttcat |
5769988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 24471437 - 24471550
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgtttt-ggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaag |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||| | |||||||||||||||||| |
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| T |
24471437 |
atgcaaggactgaatgtgcaggatcagaaaacctttgcaatgatgtttttggtgcatatgacgtcgttgaaatgaaaaattatggcacaatcaaacgaag |
24471536 |
T |
|
| Q |
220 |
aagcaacaatttca |
233 |
Q |
| |
|
|||||||||||||| |
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|
| T |
24471537 |
aagcaacaatttca |
24471550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1234 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 368 - 577
Alignment:
| Q |
1 |
tttatgtcacttgggctgcttaaattgtgtttgttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
368 |
tttatgtcacttgggctgcttaaattgtgtttgcaattgatatatatggtattgtcaaaatatacaagagaaacaagaatttatgatactgcttttctaa |
467 |
T |
|
| Q |
101 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
468 |
tatgaagttgagaatttatgatgcagggactgaatgtgcaggattagaaaacctttgcaattatgttttggttcatatggcgtcgttaaaatgaaaaagt |
567 |
T |
|
| Q |
201 |
ctggcacaat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
568 |
ctggcacaat |
577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 21269194 - 21269312
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
220 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
21269194 |
atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga |
21269293 |
T |
|
| Q |
221 |
agcaacaatttcagttcat |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21269294 |
agcaacaatttcagttcat |
21269312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 21271208 - 21271326
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
220 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21271208 |
atgcacggactaaatgtgcaggatcagaagatctttgcaatgatgttttggtgcatatggtgtcgttgaaatgaaaaagtctggcacaatcaaacgaaga |
21271307 |
T |
|
| Q |
221 |
agcaacaatttcagttcat |
239 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21271308 |
agcaacaatttcagttcat |
21271326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 25435297 - 25435414
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
25435297 |
atgcagggactgtatgtgcaggatcagaaaacctttgcactgatgttttagtgcacatggcgtcgttgaaatgaaaaagtctggcacaatcaaacaaaga |
25435396 |
T |
|
| Q |
221 |
agcaacaatttcagttca |
238 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
25435397 |
agcaacaatttcagttca |
25435414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 50828395 - 50828292
Alignment:
| Q |
135 |
tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag |
234 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50828395 |
tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag |
50828296 |
T |
|
| Q |
235 |
ttca |
238 |
Q |
| |
|
|||| |
|
|
| T |
50828295 |
ttca |
50828292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 50847458 - 50847561
Alignment:
| Q |
135 |
tgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaagaagcaacaatttcag |
234 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50847458 |
tgtgcaggatcggaaaacctttgcagtgatgttttagtgcatatggcgtcgttgaaatgaaaaagtctggtacaatcaaacaaagaagcaacaatttcag |
50847557 |
T |
|
| Q |
235 |
ttca |
238 |
Q |
| |
|
|||| |
|
|
| T |
50847558 |
ttca |
50847561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 443035 - 443143
Alignment:
| Q |
121 |
atgcagggactgaatgtgcaggatcagaaaacctttgcaatgatgttttggtgcatatggcgtcgttaaaatgaaaaagtctggcacaatcaaacgaaga |
220 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
443035 |
atgcagggactaaatgtgcag-atcagaagacctttgcaatgatgttttggtgcatatggtgtcgatgaaatgaaaaagtctggcacaatcaaactaaga |
443133 |
T |
|
| Q |
221 |
agcaacaatt |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
443134 |
agcaacaatt |
443143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 31449415 - 31449483
Alignment:
| Q |
30 |
tttgttattgatatatatggtactgtcaaaatatat--aagagaaacaagaatttatgatactgctttt |
96 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||||| || ||||| |||| |||||| |||||||||| |
|
|
| T |
31449415 |
tttgctatttatatatatggtactgtcaacatatatacaaaagaaataagattttatgctactgctttt |
31449483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 6522653 - 6522732
Alignment:
| Q |
22 |
aaattgtgttt-gttattgatatatatggtactgtcaaaatatataagagaaacaagaatttatgatactgcttttctaa |
100 |
Q |
| |
|
||||||||||| | |||||||||| ||| ||||||||||||||| |||||||| |||| ||||| ||||| | |||||| |
|
|
| T |
6522653 |
aaattgtgttttgctattgatatagatgctactgtcaaaatatacaagagaaataagatattatgctactgttattctaa |
6522732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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