View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_121 (Length: 237)
Name: NF19192_high_121
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_121 |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 5770381 - 5770589
Alignment:
| Q |
14 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770381 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacct |
5770480 |
T |
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| Q |
114 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770481 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
5770580 |
T |
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| Q |
214 |
agctaatct |
222 |
Q |
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||||||||| |
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| T |
5770581 |
agctaatct |
5770589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 33867668 - 33867460
Alignment:
| Q |
14 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867668 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacct |
33867569 |
T |
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| Q |
114 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
213 |
Q |
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| T |
33867568 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
33867469 |
T |
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| Q |
214 |
agctaatct |
222 |
Q |
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||||||||| |
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| T |
33867468 |
agctaatct |
33867460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1234 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 213 - 5
Alignment:
| Q |
14 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
213 |
agaaatttgtttttcataatggtatattttgacaataaaatcaagccacgtctaaattgaggaaaatcatgaagtaacattccaatagaaggatcaacct |
114 |
T |
|
| Q |
114 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
213 |
Q |
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| T |
113 |
aaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagcggataggtagaagcacatacacaacaaattggtctacactctcttgtggc |
14 |
T |
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| Q |
214 |
agctaatct |
222 |
Q |
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||||||||| |
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| T |
13 |
agctaatct |
5 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 23214120 - 23214278
Alignment:
| Q |
64 |
tctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagc |
163 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23214120 |
tctaaattgaggaaaatcatgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaagtggcagccatcagc |
23214219 |
T |
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| Q |
164 |
ggataggtagaagcacatacacaacaaattggtctacactctcttgtggcagctaatct |
222 |
Q |
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| T |
23214220 |
ggataggtagaagcacatacacaacaaattggtctacactctcttgtggcagctaatct |
23214278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 26497133 - 26496986
Alignment:
| Q |
50 |
aaaatcaagccatatctaaattgaggaaaatcctgaagtaacattccaatagaaggatcaacctaaagtttggtggagaaatcatttatgttagttaaag |
149 |
Q |
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|||||||||| ||| |||||| |||||||||||||| ||||||| |||||||||| ||| |||| | |||||| ||||||||||||||||||||| |
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| T |
26497133 |
aaaatcaagcagtatttaaattaaggaaaatcctgaattaacatttcaatagaaggctcagtttaaatatgtgtggaggaatcatttatgttagttaaag |
26497034 |
T |
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| Q |
150 |
tggcagccatcagcggataggtagaagcacatacacaacaaattggtc |
197 |
Q |
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| T |
26497033 |
tgtaagccatcagtggatagataagagcacacacacaacaaattggtc |
26496986 |
T |
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