View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_126 (Length: 225)

Name: NF19192_high_126
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_126
NF19192_high_126
[»] chr4 (24 HSPs)
chr4 (16-195)||(39293399-39293575)
chr4 (138-209)||(27921893-27921964)
chr4 (138-209)||(54854206-54854277)
chr4 (142-209)||(21664080-21664147)
chr4 (142-209)||(21672844-21672911)
chr4 (138-201)||(41492533-41492596)
chr4 (138-208)||(53815692-53815763)
chr4 (138-208)||(20753153-20753223)
chr4 (138-208)||(24234102-24234172)
chr4 (138-208)||(29785147-29785217)
chr4 (138-208)||(49039473-49039543)
chr4 (138-206)||(3764010-3764078)
chr4 (139-204)||(21752796-21752861)
chr4 (138-198)||(12796663-12796723)
chr4 (138-208)||(26250647-26250717)
chr4 (138-208)||(28520759-28520830)
chr4 (138-201)||(33944398-33944461)
chr4 (138-208)||(42411482-42411553)
chr4 (138-208)||(48569176-48569246)
chr4 (138-208)||(9285687-9285757)
chr4 (140-209)||(26203814-26203883)
chr4 (150-208)||(37997874-37997932)
chr4 (138-200)||(44449503-44449565)
chr4 (138-208)||(47017974-47018044)
[»] scaffold0119 (1 HSPs)
scaffold0119 (138-208)||(1036-1106)
[»] chr6 (13 HSPs)
chr6 (138-208)||(26669687-26669757)
chr6 (138-208)||(25064697-25064767)
chr6 (138-208)||(9064862-9064933)
chr6 (138-200)||(6455450-6455512)
chr6 (138-208)||(9491763-9491833)
chr6 (138-187)||(17305513-17305562)
chr6 (138-203)||(24256913-24256978)
chr6 (138-168)||(34883737-34883767)
chr6 (138-202)||(14981736-14981801)
chr6 (140-208)||(30938390-30938458)
chr6 (138-195)||(34524872-34524929)
chr6 (138-202)||(2955138-2955202)
chr6 (139-195)||(10442883-10442939)
[»] chr3 (30 HSPs)
chr3 (141-208)||(31108788-31108855)
chr3 (138-208)||(24130556-24130626)
chr3 (130-208)||(22501931-22502009)
chr3 (138-208)||(33206754-33206824)
chr3 (150-208)||(34407118-34407176)
chr3 (138-180)||(40956743-40956785)
chr3 (139-208)||(49375681-49375750)
chr3 (139-208)||(3973300-3973369)
chr3 (139-208)||(3996507-3996576)
chr3 (139-203)||(3461757-3461821)
chr3 (140-208)||(40160734-40160802)
chr3 (138-208)||(9624979-9625050)
chr3 (138-208)||(13638245-13638315)
chr3 (138-208)||(19999867-19999937)
chr3 (138-208)||(27183709-27183780)
chr3 (138-181)||(41430836-41430879)
chr3 (138-208)||(52030117-52030188)
chr3 (141-203)||(4010051-4010113)
chr3 (138-203)||(14868681-14868747)
chr3 (138-208)||(19137616-19137686)
chr3 (138-203)||(47191369-47191435)
chr3 (138-187)||(6951839-6951888)
chr3 (138-206)||(7448393-7448462)
chr3 (138-206)||(7456535-7456604)
chr3 (142-203)||(19540342-19540403)
chr3 (142-183)||(23305747-23305788)
chr3 (139-208)||(30745760-30745828)
chr3 (138-203)||(49639025-49639090)
chr3 (138-202)||(49299273-49299337)
chr3 (129-208)||(53347290-53347369)
[»] chr1 (26 HSPs)
chr1 (138-208)||(3797852-3797922)
chr1 (138-202)||(7906360-7906424)
chr1 (138-202)||(20357457-20357521)
chr1 (138-202)||(20562434-20562498)
chr1 (141-208)||(195044-195111)
chr1 (138-208)||(18467198-18467268)
chr1 (138-208)||(18179325-18179395)
chr1 (139-208)||(24168607-24168676)
chr1 (140-208)||(4288587-4288655)
chr1 (138-202)||(19536714-19536778)
chr1 (148-208)||(50199504-50199564)
chr1 (138-209)||(52833133-52833205)
chr1 (141-208)||(49251423-49251490)
chr1 (138-208)||(1580826-1580896)
chr1 (138-208)||(2643843-2643913)
chr1 (138-208)||(9768837-9768907)
chr1 (138-204)||(9931084-9931150)
chr1 (138-208)||(15774340-15774410)
chr1 (138-210)||(2556556-2556628)
chr1 (138-195)||(18003813-18003870)
chr1 (138-203)||(52961115-52961180)
chr1 (121-208)||(2052710-2052798)
chr1 (141-181)||(8758423-8758463)
chr1 (144-208)||(11802048-11802112)
chr1 (144-208)||(16182812-16182876)
chr1 (138-194)||(37490887-37490943)
[»] chr8 (17 HSPs)
chr8 (138-202)||(6325268-6325331)
chr8 (139-208)||(44136305-44136374)
chr8 (138-208)||(2696529-2696600)
chr8 (139-202)||(6372637-6372700)
chr8 (141-188)||(17467278-17467325)
chr8 (141-208)||(26657856-26657923)
chr8 (138-208)||(9524954-9525024)
chr8 (138-208)||(24608511-24608581)
chr8 (138-187)||(7345425-7345474)
chr8 (138-208)||(38790600-38790672)
chr8 (129-208)||(38955194-38955273)
chr8 (138-208)||(2800015-2800086)
chr8 (139-208)||(7314730-7314800)
chr8 (138-208)||(15042393-15042463)
chr8 (138-208)||(29937207-29937277)
chr8 (138-208)||(39432356-39432426)
chr8 (140-208)||(38344051-38344119)
[»] chr2 (24 HSPs)
chr2 (138-209)||(39334908-39334979)
chr2 (140-208)||(8080698-8080766)
chr2 (138-202)||(35352444-35352508)
chr2 (141-208)||(6952273-6952339)
chr2 (138-208)||(8234820-8234890)
chr2 (138-208)||(10262736-10262806)
chr2 (138-208)||(34107271-34107341)
chr2 (138-208)||(38807878-38807948)
chr2 (140-181)||(38581660-38581701)
chr2 (138-208)||(20942137-20942204)
chr2 (140-188)||(39118392-39118440)
chr2 (138-208)||(580811-580881)
chr2 (138-208)||(17154646-17154716)
chr2 (138-208)||(20122503-20122573)
chr2 (138-188)||(21875019-21875069)
chr2 (139-205)||(26807115-26807181)
chr2 (138-208)||(30474223-30474293)
chr2 (174-208)||(31223656-31223690)
chr2 (142-200)||(31956867-31956925)
chr2 (138-203)||(7086250-7086315)
chr2 (142-195)||(17896826-17896879)
chr2 (139-187)||(917340-917388)
chr2 (140-208)||(22297480-22297548)
chr2 (140-208)||(34620517-34620585)
[»] chr5 (11 HSPs)
chr5 (138-208)||(33800890-33800960)
chr5 (138-210)||(31004156-31004228)
chr5 (138-201)||(6447515-6447579)
chr5 (140-208)||(30403749-30403817)
chr5 (138-201)||(7147054-7147117)
chr5 (138-209)||(21017633-21017704)
chr5 (138-208)||(22599964-22600033)
chr5 (138-208)||(25660909-25660979)
chr5 (138-203)||(42595738-42595803)
chr5 (152-208)||(5598775-5598831)
chr5 (140-208)||(32252947-32253015)
[»] chr7 (18 HSPs)
chr7 (138-195)||(37917389-37917446)
chr7 (138-208)||(31475868-31475939)
chr7 (138-208)||(7465463-7465533)
chr7 (138-196)||(32387165-32387223)
chr7 (138-203)||(25818283-25818348)
chr7 (138-195)||(35578337-35578394)
chr7 (139-187)||(32814825-32814873)
chr7 (141-208)||(14967662-14967729)
chr7 (141-208)||(15397138-15397205)
chr7 (138-208)||(47641045-47641115)
chr7 (138-192)||(35498395-35498449)
chr7 (138-208)||(38032883-38032953)
chr7 (138-206)||(25833555-25833623)
chr7 (148-208)||(28800021-28800081)
chr7 (142-187)||(32534634-32534679)
chr7 (138-187)||(48053146-48053195)
chr7 (141-208)||(4611242-4611309)
chr7 (129-201)||(43712348-43712420)
[»] scaffold0112 (1 HSPs)
scaffold0112 (138-208)||(17959-18030)
[»] scaffold0036 (1 HSPs)
scaffold0036 (138-208)||(25022-25093)
[»] scaffold0308 (1 HSPs)
scaffold0308 (138-208)||(7072-7143)
[»] scaffold0121 (1 HSPs)
scaffold0121 (138-208)||(46526-46596)
[»] scaffold0168 (1 HSPs)
scaffold0168 (138-195)||(34074-34131)
[»] scaffold0088 (1 HSPs)
scaffold0088 (120-208)||(10826-10914)
[»] scaffold0054 (1 HSPs)
scaffold0054 (142-202)||(67162-67222)
[»] scaffold0009 (1 HSPs)
scaffold0009 (141-209)||(185539-185607)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 39293399 - 39293575
Alignment:
Q  16 gagtgaattaaatattttcacaagaaaggtgtttgaattgtgaactattcaaaattactatacaatttcaagcaaatatttaaatttggtcagttggtta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39293399 gagtgaattaaatattttcacaagaaaggtgtttgaattgtgaactattcaaaattactaaacaatttcaagcaaatatttaaatttggtcagttggtta 39293498  T
Q  116 gtaagtaataattataataatacccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    ||||||||||   ||||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||||| |||||||    
T  39293499 gtaagtaata---ataataatatccgtgagcatagctcagttggtagggacatgcataattatatgcaggggttggggtt 39293575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Original strand, 27921893 - 27921964
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||||||| |||||||||||||||||| ||| |||||||| |||||| |||||| |||||||||||||    
T  27921893 cccgtgagcatagctcagttggtagggacatgcattattatatgcaggggccggggttcgaaccccagacat 27921964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 54854277 - 54854206
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||| ||||||| |||||    
T  54854277 cccgtgagcatagctcagttggcagggacatgcataattatatgcaggggctggggttcgaaccccggacat 54854206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 21664080 - 21664147
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||| ||||||||||||||| ||  ||||||||||| |||||||| |||| ||| |||||||||    
T  21664080 tgagcatagctcagttggtagggatatgtataattatatgcaggggctgaggttcgaatcccagacat 21664147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 21672844 - 21672911
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||| ||||||||||||||| ||  ||||||||||| |||||||| |||| ||| |||||||||    
T  21672844 tgagcatagctcagttggtagggatatgtataattatatgcaggggctgaggttcgaatcccagacat 21672911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 41492596 - 41492533
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacc 201  Q
    |||||||||||| ||||||||| |||||||| ||| |||||||| |||||| |||||| |||||    
T  41492596 cccgtgagcatagctcagttggcagggacatgcattattatatgcaggggccggggttcgaacc 41492533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 53815692 - 53815763
Alignment:
Q  138 cccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||||| | ||| |||||||| ||||||||||||| ||||||| ||||    
T  53815692 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggaca 53815763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 20753223 - 20753153
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||||||| | || ||| |||||||| |||||| |||||| ||||||| ||||    
T  20753223 cccgtgagcatagctcagttggtaggaaaatgcattattatatgtaggggccggggttcgaaccccggaca 20753153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 24234172 - 24234102
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||||||||||| ||||    
T  24234172 cccgtgagcatagctcagttggtaggtcaatgcattattatatgcaggggccggggtttgaaccccggaca 24234102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 29785147 - 29785217
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||||||||   | ||||| ||||||||||||| ||||||| ||||    
T  29785147 cccgtgagcatagctcagttggcagggacatacactgtaatatgtaggggctggggttcgaaccccggaca 29785217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 49039543 - 49039473
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||||| |||  ||||||| |||| |||||||| ||||||| ||||    
T  49039543 cccgtgagcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggaca 49039473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 3764078 - 3764010
Alignment:
Q  138 cccgtgagcataactcagttggtagggacat-acataattatatgaaggggctggggtttgaaccccaga 206  Q
    ||||||||| || ||||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||    
T  3764078 cccgtgagcttagctcagttggtagggatattacata-ttatatgcaggggctggggttcgaaccccaga 3764010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 21752796 - 21752861
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccca 204  Q
    ||||||| |||| |||||||| | ||||||  || |||||||| ||||||||||||||||||||||    
T  21752796 ccgtgagtataattcagttggcaaggacatgtattattatatgcaggggctggggtttgaacccca 21752861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 12796663 - 12796723
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttga 198  Q
    |||||||||||||||||||||| ||| ||||||||  ||||||| |||||  |||||||||    
T  12796663 cccgtgagcataactcagttggcaggaacatacattgttatatgcaggggacggggtttga 12796723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 26250647 - 26250717
Alignment:
Q  138 cccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||||||||| | ||||||| |||| |||||| |||||| ||| ||| ||||    
T  26250647 cccgtgagcataactcagttggtagggacattgcataatt-tatgcaggggccggggttcgaatcccggaca 26250717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 28520830 - 28520759
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  28520830 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 28520759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 33944461 - 33944398
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacc 201  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||| |||||| |||||    
T  33944461 cccgtgagcataactcagttggtaggataatgcattattatatgcaggggccggggttcgaacc 33944398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 42411553 - 42411482
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||| || |||||||||||| |||||  |||||| ||||||| ||||    
T  42411553 cccgtgagcatagctcagttggcagggacaatgcataattatatgcaggggtcggggttcgaaccccggaca 42411482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 48569246 - 48569176
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  48569246 cccgtgagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagaca 48569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 9285757 - 9285687
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||| ||||||||   || ||| |||||||| |||| |||||||| ||||||||||||    
T  9285757 cccgtgagcatagctcaattggtaggacaatgcattattatatgcagggtctggggttcgaaccccagaca 9285687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 26203883 - 26203814
Alignment:
Q  140 cgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||||| ||||||||||||| ||| | ||| ||||||| |||||| ||||||||||||||| |||||    
T  26203883 cgtgagcatagctcagttggtagg-acagtgcattattatataaaggggttggggtttgaacccctgacat 26203814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 37997932 - 37997874
Alignment:
Q  150 actcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| |||||||| |||  ||||||| |||| |||||||| ||||||||||||    
T  37997932 actcagttggcagggacattcattgttatatgcagggtctggggttcgaaccccagaca 37997874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 44449565 - 44449503
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaac 200  Q
    |||||||||||||||||||| | ||| |||| |||  ||||||| |||||| |||||||||||    
T  44449565 cccgtgagcataactcagttagcaggaacatgcattgttatatgtaggggccggggtttgaac 44449503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 47018044 - 47017974
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  47018044 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggaca 47017974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 1036 - 1106
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  1036 cccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagaca 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 26669757 - 26669687
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||    
T  26669757 cccgtgagcatagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagaca 26669687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 25064767 - 25064697
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||  |||||||||| |||||| ||| |||||||| ||||| ||||||| ||||||||||||    
T  25064767 cccgtgagcatagttcagttggtatggacatgcattattatatgcaggggttggggttcgaaccccagaca 25064697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 9064862 - 9064933
Alignment:
Q  138 cccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||||| | ||| |||||||| |||||| |||||| ||||||||||||    
T  9064862 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccagaca 9064933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 6455450 - 6455512
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaac 200  Q
    ||||||| ||||  ||||||||||||||||||||| |||||||| | ||||||||||| ||||    
T  6455450 cccgtgaacatagttcagttggtagggacatacattattatatgtatgggctggggttcgaac 6455512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 9491833 - 9491763
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  9491833 cccgtgagcataactcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggaca 9491763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 17305513 - 17305562
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||| |||||    
T  17305513 cccgtgaacataactcagttggtagggacatgcattattatatgcagggg 17305562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 24256913 - 24256978
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    ||||||||||||| ||||||||||| ||||| ||| |||||||| |||||| | |||| |||||||    
T  24256913 cccgtgagcataagtcagttggtagagacatgcattattatatgcaggggccgaggttcgaacccc 24256978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 34883737 - 34883767
Alignment:
Q  138 cccgtgagcataactcagttggtagggacat 168  Q
    |||||||||||||||||||||||||||||||    
T  34883737 cccgtgagcataactcagttggtagggacat 34883767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 14981801 - 14981736
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccc 202  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||    
T  14981801 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccc 14981736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 30938390 - 30938458
Alignment:
Q  140 cgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||| |||||||||||||||||||| | ||||| |||||| |||| | |||||| ||||||||||||    
T  30938390 cgtgagcttaactcagttggtagggacattgcataa-tatatgcagggaccggggttcgaaccccagaca 30938458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 34524872 - 34524929
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||||||| ||||||||| |||||||| |||  ||||||| |||||| ||||||    
T  34524872 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggtt 34524929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 2955202 - 2955138
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||||||||  |||| ||  |||||||| ||| |||||||| |||||| |||||||||||||    
T  2955202 cccgtgagcatagttcagatgccagggacatgcattattatatgcaggggcaggggtttgaaccc 2955138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 10442883 - 10442939
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||||||||||||||| ||| || ||||||  ||||||| ||||| |||||||    
T  10442883 ccgtgagcataactcagttgatagagatatacattgttatatgtaggggttggggtt 10442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 31108855 - 31108788
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||| |||||    
T  31108855 gtgagcataactcagttggcagggacatgcataattatatgcaggggctggggttcgaacccgagaca 31108788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 24130556 - 24130626
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| |||||  |||||||||||||| ||||    
T  24130556 cccgtgagcataactcagttggcagggacatacattgttatatgcaggggacggggtttgaaccccggaca 24130626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 22502009 - 22501931
Alignment:
Q  130 taataatacccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||| ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  22502009 taataatccccgtgagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagaca 22501931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 33206754 - 33206824
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| ||||||||||||| ||||||| ||||    
T  33206754 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggaca 33206824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 34407176 - 34407118
Alignment:
Q  150 actcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| |||||||| ||| |||||||| ||||| ||||||| ||||||||||||    
T  34407176 actcagttggcagggacatgcattattatatgcaggggttggggttcgaaccccagaca 34407118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 40956785 - 40956743
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatat 180  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  40956785 cccgtgagcataactcagttggtagggacaaacattattatat 40956743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 49375750 - 49375681
Alignment:
Q  139 ccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| ||||||||| ||| ||||||| ||||    
T  49375750 ccgtgagcttaactcagttggtagggacattacataatt-tatgcaggggctggcgttcgaaccccggaca 49375681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 3973300 - 3973369
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||| |||||||||||||||||| |||  ||||||| |||||| | | |||||||||| ||||    
T  3973300 ccgtgagcatagctcagttggtagggacatgcattgttatatgcaggggccgcgatttgaaccccggaca 3973369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 3996576 - 3996507
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||| |||||||||||||||||| |||  ||||||| |||||| | | |||||||||| ||||    
T  3996576 ccgtgagcatagctcagttggtagggacatgcattgttatatgcaggggccgcgatttgaaccccggaca 3996507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 3461821 - 3461757
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    ||||||||||||||||||||  |||||||| |||  ||||||| ||||| ||||||| |||||||    
T  3461821 ccgtgagcataactcagttgacagggacatgcattgttatatgtaggggttggggttcgaacccc 3461757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 40160734 - 40160802
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| |||| |||| |||||||| |||  |||||||  |||||||||||||||||||| ||||    
T  40160734 cgtgagcatagctcaattggcagggacatgcattgttatatgccggggctggggtttgaaccccggaca 40160802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 9624979 - 9625050
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  9624979 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 9625050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 13638315 - 13638245
Alignment:
Q  138 cccgtgagcataactcagttggtagggacat-acataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| ||  |||||||||||||| || ||||| ||||||| ||||||||||||| ||||||||||||    
T  13638315 cccgtgagcttagttcagttggtagggatattacata-ttatatgtaggggctggggttcgaaccccagaca 13638245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 19999867 - 19999937
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  19999867 cccgtgagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagaca 19999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 27183780 - 27183709
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  27183780 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 27183709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 41430879 - 41430836
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatg 181  Q
    |||||||||||||||||||||||||||| || ||| ||||||||    
T  41430879 cccgtgagcataactcagttggtagggatatgcattattatatg 41430836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 52030117 - 52030188
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| |||||| ||  || |||||||| |||||| |||||| ||||||| ||||    
T  52030117 cccgtgagcataactcagttggcagggacaatgtattattatatgcaggggccggggttcgaaccccggaca 52030188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 4010113 - 4010051
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    ||||||||| |||||||||||||||||| |||  ||||||| |||||| |  |||||||||||    
T  4010113 gtgagcatagctcagttggtagggacatgcattgttatatgcaggggccgcagtttgaacccc 4010051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 14868681 - 14868747
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| |||||||    
T  14868681 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaacccc 14868747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 19137616 - 19137686
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||| |||| |||  ||||||| |||||| | |||| ||||||||||||    
T  19137616 cccgtgagcatagctcagttggcaggaacatgcattgttatatgcaggggccgaggttcgaaccccagaca 19137686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 47191369 - 47191435
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| ||||||||| ||| |||||||    
T  47191369 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggagttcgaacccc 47191435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 6951888 - 6951839
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    |||||||||||||||||||||  |||||||| ||| |||||||| |||||    
T  6951888 cccgtgagcataactcagttgacagggacatgcattattatatgcagggg 6951839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 7448462 - 7448393
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccaga 206  Q
    |||||||||||| |||||||| ||||||| || ||| |||||||| |||||| ||| || ||||||||||    
T  7448462 cccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaaccccaga 7448393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 7456604 - 7456535
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccaga 206  Q
    |||||||||||| |||||||| ||||||| || ||| |||||||| |||||| ||| || ||||||||||    
T  7456604 cccgtgagcatagctcagttgatagggacaatgcattattatatgcaggggccgggattcgaaccccaga 7456535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 19540342 - 19540403
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||| |||||||||||||   |||||| |||||||| ||| ||||||||| |||||||    
T  19540342 tgagcatagctcagttggtaggacaatacattattatatgcaggagctggggttcgaacccc 19540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 23305747 - 23305788
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaa 183  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  23305747 tgagcataactcagttggtagggacatgcattgttatatgaa 23305788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 30745828 - 30745760
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||| ||||||||| |||||||| |||  |||||||  | |||| ||||||||||||||||||    
T  30745828 ccgtgagcatagctcagttggcagggacatgcattgttatatgcggaggct-gggtttgaaccccagaca 30745760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 49639025 - 49639090
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| |||||||    
T  49639025 cccgtgagcatagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaacccc 49639090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 49299337 - 49299273
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||||||||  |||||||  |||||||| |||||||||||| |  |||||||||| ||||||    
T  49299337 cccgtgagcatagttcagttgacagggacatgcataattatatgtaaaggctggggttcgaaccc 49299273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 53347369 - 53347290
Alignment:
Q  129 ataataatacccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||| || ||||||||| || ||||||||||||||| ||  |||| ||||||| |||| |||||||| ||||||||||||    
T  53347369 ataattatccccgtgagcttagctcagttggtagggatattgcata-ttatatgcagggactggggttcgaaccccagaca 53347290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 3797852 - 3797922
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||| |||||| |||||    
T  3797852 cccgtgagcataactcagttggtaaggatatgcataattatatgtaggggctggggttcgaaccctagaca 3797922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 7906424 - 7906360
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||||||||  ||||||||||||||||| |||  ||||||| ||||||||||||| ||||||    
T  7906424 cccgtgagcatagttcagttggtagggacatgcattgttatatgcaggggctggggttcgaaccc 7906360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 20357457 - 20357521
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||||||||||||||||||||||   || ||| |||||||| ||||||||||||| ||||||    
T  20357457 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccc 20357521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 20562498 - 20562434
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||||||||||||||||||||||   || ||| |||||||| ||||||||||||| ||||||    
T  20562498 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccc 20562434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 195044 - 195111
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||| || ||||||||| |||||||| |||||||||||| |||||||| |||| | ||||||||||    
T  195044 gtgagcgtagctcagttggcagggacatgcataattatatgcaggggctgaggttcgtaccccagaca 195111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 18467268 - 18467198
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  18467268 cccgtgagcatagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagaca 18467198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 18179325 - 18179395
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| |||||||| |||  ||||||| |||| | || ||| ||||||||||||    
T  18179325 cccgtgagcataactcagttggcagggacatgcattgttatatgcagggaccggagttcgaaccccagaca 18179395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 24168676 - 24168607
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||| ||||||| ||||| |||| ||| |||||||| |||| | |||||| ||||||||||||    
T  24168676 ccgtgagcatagctcagtttgtaggaacatgcattattatatgtagggaccggggttcgaaccccagaca 24168607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 4288587 - 4288655
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||| |||||| |||||||||| |||||||| |||||   | ||| ||||||||||||    
T  4288587 cgtgagcataactcaattggtatggacatacattattatatgcaggggtcagagttcgaaccccagaca 4288655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 19536714 - 19536778
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||| |||||| |||||||||||||||||| |||   |||||| ||||||||||||| ||||||    
T  19536714 cccgtaagcatagctcagttggtagggacatgcattgctatatgtaggggctggggttcgaaccc 19536778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 50199564 - 50199504
Alignment:
Q  148 taactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||| |||  ||||||| |||||| |||||| ||||||| ||||    
T  50199564 taactcagttggtagggacatgcattgttatatgcaggggccggggttcgaaccccggaca 50199504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 52833205 - 52833133
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    ||||||||| |||||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| |||||    
T  52833205 cccgtgagcctaactcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggacat 52833133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 49251490 - 49251423
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||   || ||| |||||||| |||||  |||||| ||||||||||||    
T  49251490 gtgagcataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagaca 49251423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 1580826 - 1580896
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| |||||||||||   ||||||| | ||| || |||| ||| ||||||||    
T  1580826 cccgtgagcataactcagttggcagggacatacaatgttatatgcaagggttgaggttcgaatcccagaca 1580896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 2643913 - 2643843
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| || |||||| || ||||| ||| |||||||| | |||  |||||||||||||||||||    
T  2643913 cccgtgagcatagcttagttggcagagacatgcattattatatgcatgggtcggggtttgaaccccagaca 2643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 9768907 - 9768837
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||||| |||  ||||||| |||||  |||||| ||||||| ||||    
T  9768907 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggaca 9768837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 9931084 - 9931150
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccca 204  Q
    |||||||||||||||||||| | |||||||| ||| |||||||| | | ||||| ||| ||||||||    
T  9931084 cccgtgagcataactcagttagcagggacatgcattattatatgcaagagctggagttcgaacccca 9931150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 15774410 - 15774340
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||  |||||| ||||||| ||||    
T  15774410 cccgtgagcataactcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggaca 15774340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 2556556 - 2556628
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagacatt 210  Q
    ||||| ||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||||    
T  2556556 cccgtaagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagacatt 2556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 18003813 - 18003870
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||||||| ||||||||| |||||||| |||  ||||||| |||||| ||||||    
T  18003813 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggtt 18003870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 52961180 - 52961115
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| ||||||||| | |||||| |||  ||||||| |||||| |||||| |||||||    
T  52961180 cccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaacccc 52961115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 2052798 - 2052710
Alignment:
Q  121 taataattataataatacccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||| |||| | | |||||||||||| ||||||||| |||||| || ||| || ||||| |||||| |||||| ||||||| ||||    
T  2052798 taataataataaaagtccccgtgagcatagctcagttggcagggacaatgcattatcatatgcaggggccggggttcgaaccccggaca 2052710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 8758463 - 8758423
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatg 181  Q
    |||||||||| ||||||||||| ||||||||| ||||||||    
T  8758463 gtgagcataattcagttggtagagacatacattattatatg 8758423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 11802112 - 11802048
Alignment:
Q  144 agcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||   || ||| |||||||| ||||| ||||||| ||||||| ||||    
T  11802112 agcataactcagttggtaggacaatgcattattatatgtaggggttggggttcgaaccccggaca 11802048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 16182812 - 16182876
Alignment:
Q  144 agcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||| ||||||||| || ||||| ||| |||||||| |||||||||||||  |||||| ||||    
T  16182812 agcatagctcagttggcagagacatgcattattatatgtaggggctggggttcaaaccccggaca 16182876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 37490887 - 37490943
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggt 194  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||| |||||    
T  37490887 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccggggt 37490943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 6325268 - 6325331
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    |||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  6325268 cccgtgagcata-ctcagttgatagggacatacataattatatgcaggggttggggtttgaaccc 6325331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 44136374 - 44136305
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||||   ||| || |||||||| |||||||| |||| ||||||||||||    
T  44136374 ccgtgagcataactcagttggtaggacaatatattattatatgcaggggctgaggttcgaaccccagaca 44136305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 2696529 - 2696600
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  2696529 cccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 2696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 6372700 - 6372637
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||| ||| ||||||||| |||||||| |||||||||||| ||||| ||||||| ||||||    
T  6372700 ccgtgaggatagctcagttggcagggacatgcataattatatgcagggggtggggttcgaaccc 6372637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 17467278 - 17467325
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggc 188  Q
    ||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  17467278 gtgagcataactcagttggtagggatatacattattatatgcaggggc 17467325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 26657856 - 26657923
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| |||||||||||||||||| |||  ||||||| |||| | |||||| ||||||||||||    
T  26657856 gtgagcatagctcagttggtagggacatgcattgttatatgcagggaccggggttcgaaccccagaca 26657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 9524954 - 9525024
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||||||||    
T  9524954 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagaca 9525024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 24608581 - 24608511
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||||||||    
T  24608581 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagaca 24608511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 7345425 - 7345474
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    |||||||||||||||||||||| |||||||| ||| |||||||| |||||    
T  7345425 cccgtgagcataactcagttggcagggacatgcattattatatgcagggg 7345474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 38790672 - 38790600
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaagggg-ctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||| |||||| || ||| |||||||| ||||| | |||||| ||||||||||||    
T  38790672 cccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccgggggttcgaaccccagaca 38790600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 38955273 - 38955194
Alignment:
Q  129 ataataatacccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||| ||| ||||||||| |||||||||||||||||| | ||||| |||||||| |||||| |||||| ||||||| ||||    
T  38955273 ataaaaatccccgtgagcttaactcagttggtagggatattacat-attatatgcaggggccggggttcgaaccccggaca 38955194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 2800015 - 2800086
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  2800015 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 2800086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 7314730 - 7314800
Alignment:
Q  139 ccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||| |||| |||||| |||||| |||||||| |||||| | |||| ||||||| ||||    
T  7314730 ccgtgagcataactcaattggcagggacaatacattattatatgcaggggccgaggttcgaaccccggaca 7314800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 15042463 - 15042393
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  15042463 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggaca 15042393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 29937207 - 29937277
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||||||||||||  ||  ||||||| |||||| || ||| ||||| ||||||    
T  29937207 cccgtgagcatagctcagttggtagggacatgtattgttatatgcaggggccggagttcgaacctcagaca 29937277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 39432426 - 39432356
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| |||||||| ||   ||||||| ||||| ||||||| ||||| ||||||    
T  39432426 cccgtgagcatagctcagttggcagggacatgcaatgttatatgcaggggttggggttcgaacctcagaca 39432356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 38344051 - 38344119
Alignment:
Q  140 cgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||| |||||||||||||||||| ||  |||| ||||||| ||| ||||||||| ||||||||||||    
T  38344051 cgtgagcttaactcagttggtagggatattgcata-ttatatgcaggagctggggttcgaaccccagaca 38344119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 39334979 - 39334908
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    |||||||||||||||||||||| |||||||| ||| |||||||  ||||||||||||| |||| ||||||||    
T  39334979 cccgtgagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacat 39334908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 8080766 - 8080698
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| |||| ||||||||||||| ||| |||||||  ||||||||| ||| ||||||||||||    
T  8080766 cgtgagcatagctcaattggtagggacatgcattattatatataggggctggagttcgaaccccagaca 8080698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 35352508 - 35352444
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    ||||||| |||| ||||||||| |||||||| ||||||||||||  |||||||||||| ||||||    
T  35352508 cccgtgaacatagctcagttggcagggacatgcataattatatgcgggggctggggttcgaaccc 35352444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 6952273 - 6952339
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||| |||| |||||||||| ||||||| ||||||||||||  |||||||||||| ||||||||||||    
T  6952273 gtgaacatagctcagttggt-gggacatgcataattatatgcgggggctggggttcgaaccccagaca 6952339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 8234890 - 8234820
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   |||||| |||||||| |||||| |||||| ||||||| ||||    
T  8234890 cccgtgagcatagctcagttggtaggacaatacattattatatgtaggggccggggttcgaaccccggaca 8234820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 10262736 - 10262806
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||  |||||| ||||||||||||    
T  10262736 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagaca 10262806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 34107271 - 34107341
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||||||  ||||||||||| ||||| || |||| |||| |||||||    
T  34107271 cccgtgagcatagctcagttggcagggacatgtataattatatgcaggggttgaggttcgaactccagaca 34107341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 38807878 - 38807948
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||| ||||||||||||| |||||||| |||||||||||| ||||  || | || ||||||||||||    
T  38807878 cccgtgagtataactcagttggcagggacatgcataattatatgcagggaatgagattcgaaccccagaca 38807948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 38581701 - 38581660
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatg 181  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  38581701 cgtgagcataactcagttggtagagacatacattattatatg 38581660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 20942204 - 20942137
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||   ||||||| |||||||| |||||||||||| ||||| ||| ||| ||||||||||||    
T  20942204 cccgtgagcata---cagttggcagggacatgcataattatatgtaggggatggagttcgaaccccagaca 20942137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 39118392 - 39118440
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggc 188  Q
    ||||||| |||||||||||||||||||||||||  ||||||| ||||||    
T  39118392 cgtgagcgtaactcagttggtagggacatacattgttatatgcaggggc 39118440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 580881 - 580811
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  580881 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggaca 580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 17154646 - 17154716
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||| |||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  17154646 cccgtgagcataactcggttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggaca 17154716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 20122573 - 20122503
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  20122573 cccgtgagcatagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggaca 20122503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 21875069 - 21875019
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggc 188  Q
    ||||||||||||| ||||||||| || |||| |||||||||||| ||||||    
T  21875069 cccgtgagcataattcagttggtgggaacatgcataattatatgcaggggc 21875019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 26807181 - 26807115
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccag 205  Q
    |||||||||||||||||||||||||   || ||| |||||||| ||||||  ||||| |||||||||    
T  26807181 ccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccagggttcgaaccccag 26807115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 30474293 - 30474223
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||||||||   || ||| |||||||| |||||| | |||| ||||||||||||    
T  30474293 cccgtgagcatagctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaaccccagaca 30474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 31223656 - 31223690
Alignment:
Q  174 attatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||| ||||||||||||||||||||||||||    
T  31223656 attatatgcaggggctggggtttgaaccccagaca 31223690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 31956867 - 31956925
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaac 200  Q
    ||||||||||||||||||||||   || ||| |||||||| ||||||||||||| ||||    
T  31956867 tgagcataactcagttggtaggacaatgcattattatatgtaggggctggggttcgaac 31956925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 7086250 - 7086315
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| ||||||||||||||  || ||| |||||||| |||||| ||| || |||||||    
T  7086250 cccgtgagcatagctcagttggtagggcaatgcattattatatgcaggggccgggattcgaacccc 7086315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 17896826 - 17896879
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||| ||||||||| |||||||| |||||||||||  ||||| |||||||    
T  17896826 tgagcatagctcagttggcagggacatgcataattatatacaggggttggggtt 17896879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 917388 - 917340
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    |||||||| ||||||||||||||| ||||| ||| |||||||| |||||    
T  917388 ccgtgagcttaactcagttggtagagacatgcattattatatgcagggg 917340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 22297548 - 22297480
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| |||||||||||||   || ||| |||||||| |||||| |||||| ||||||| ||||    
T  22297548 cgtgagcatagctcagttggtaggacaatgcattattatatgcaggggcaggggttcgaaccccggaca 22297480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 34620517 - 34620585
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||| ||| |||||||||   || ||| |||||||| | ||| ||||||||||||||||||||    
T  34620517 cgtgagcatagctcggttggtaggacaatgcattattatatgcaagggttggggtttgaaccccagaca 34620585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 33800890 - 33800960
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||||   || ||| |||||||| |||||| |||||| ||||||||||||    
T  33800890 cccgtgagcataactcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagaca 33800960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 31004228 - 31004156
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacatt 210  Q
    ||||||||||||||||| |||||||||||||||||  ||||| | ||  | ||||||||||||||| ||||||    
T  31004228 cccgtgagcataactcaattggtagggacatacattgttataggcagaagttggggtttgaaccccggacatt 31004156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 6447579 - 6447515
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaacc 201  Q
    |||||||||||||||||||||| |||||| || ||| |||||||| |||||| |||||| |||||    
T  6447579 cccgtgagcataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaacc 6447515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 30403749 - 30403817
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||   |||||| |||||||  |||||| || ||||||||||| ||||    
T  30403749 cgtgagcataactcagttggtaggacaatacattattatatacaggggccggagtttgaaccccggaca 30403817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 7147117 - 7147054
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacc 201  Q
    |||||||||||| ||||||||||| |||||| ||| |||||||| |||||  |||||| |||||    
T  7147117 cccgtgagcatagctcagttggtaaggacatgcattattatatgcaggggtcggggttcgaacc 7147054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 21017704 - 21017633
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    ||||||| |||| |||||||||||||   || ||| |||||||| || |||||||||||||||||| |||||    
T  21017704 cccgtgaacatagctcagttggtaggacaatgcattattatatgtagtggctggggtttgaaccccggacat 21017633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 22600033 - 22599964
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||||||||||   || ||| |||||||| | ||| |||| |||||||||||||||    
T  22600033 cccgtgagcataactcagttggtaggacaatgcattattatatgca-gggttgggatttgaaccccagaca 22599964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 25660909 - 25660979
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||| || |||  ||||||| |||||| ||| || ||||||||||||    
T  25660909 cccgtgagcatagctcagttggcagggatatgcattgttatatgcaggggccgggattcgaaccccagaca 25660979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 42595738 - 42595803
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    |||||||||||| |||| ||||||||   |||||| |||||||| |||| | ||||||||||||||    
T  42595738 cccgtgagcatagctcaattggtaggacaatacattattatatgcagggaccggggtttgaacccc 42595803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Complemental strand, 5598831 - 5598775
Alignment:
Q  152 tcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||| ||||||| | |||||||| ||||| || |||||||||| ||||||    
T  5598831 tcagttggtagagacatacgttattatatgtaggggttgaggtttgaacctcagaca 5598775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 32253015 - 32252947
Alignment:
Q  140 cgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||| |||| |||||||| || |||||| ||| |||||||| |||||  |||||| ||||||||||||    
T  32253015 cgtgaacatagctcagttgataaggacatgcattattatatgtaggggtcggggttcgaaccccagaca 32252947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 37917389 - 37917446
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||||||| ||||||||||||| |||| |||||||||||| ||||| |||||||    
T  37917389 cccgtgagcatagctcagttggtaggaacatgcataattatatgcaggggttggggtt 37917446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 31475939 - 31475868
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||||||  ||| |||||||| ||||||||||||| ||||||| ||||    
T  31475939 cccgtgagcatagctcagttggcagggacattgcattattatatgcaggggctggggttcgaacccctgaca 31475868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 7465463 - 7465533
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| || ||||| ||| |||||||| |||||| |||||| ||||||| ||||    
T  7465463 cccgtgagcatagctcagttggcagagacatgcattattatatgcaggggccggggttcgaaccccggaca 7465533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 32387223 - 32387165
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggttt 196  Q
    ||||||||||||||||||||||||||   |||||| |||||||| |||||| |||||||    
T  32387223 cccgtgagcataactcagttggtaggataatacattattatatgtaggggccggggttt 32387165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 25818283 - 25818348
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacccc 203  Q
    ||||||||||||||||||||||||||   || ||| |||||||| ||||||||| ||| |||||||    
T  25818283 cccgtgagcataactcagttggtaggataatgcattattatatgcaggggctggagttcgaacccc 25818348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 35578394 - 35578337
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    ||||||| ||||  |||||| | ||||||||||||||||||||| |||||||||||||    
T  35578394 cccgtgaacatagttcagttagcagggacatacataattatatgtaggggctggggtt 35578337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 32814825 - 32814873
Alignment:
Q  139 ccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    ||||||||||| |||||||||||||||||| ||| |||||||| |||||    
T  32814825 ccgtgagcatagctcagttggtagggacatgcattattatatgcagggg 32814873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 14967729 - 14967662
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||   || ||| |||||||| |||||  |||||||||||| ||||||    
T  14967729 gtgagcataactcagttggtaggacaatgcattattatatgtaggggtcggggtttgaacctcagaca 14967662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 15397205 - 15397138
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||||||||||||||   || ||| |||||||| |||||  |||||||||||| ||||||    
T  15397205 gtgagcataactcagttggtaggacaatgcattattatatgtaggggtcggggtttgaacctcagaca 15397138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 47641045 - 47641115
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  47641045 cccgtgagcttagctcagttggtagggatattgcata-ttatatgtaggggctggggttcgaaccccagaca 47641115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 35498395 - 35498449
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggg 192  Q
    ||||| |||||||||||||||| |||||||| ||| |||||||| ||||| ||||    
T  35498395 cccgtaagcataactcagttggcagggacatgcattattatatgcaggggttggg 35498449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 38032953 - 38032883
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||| |||||||||||||| |||||||| |||  ||||||  |||||| |||||| ||||||| ||||    
T  38032953 cccgtgaacataactcagttggcagggacatgcattgttatatacaggggccggggttcgaaccccggaca 38032883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 25833555 - 25833623
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccaga 206  Q
    ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||    
T  25833555 cccgtgagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccaga 25833623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 28800081 - 28800021
Alignment:
Q  148 taactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||||||||||||| || ||||||| |||| |||||| |||||||||||||| ||||    
T  28800081 taactcagttggtagggacaatgcataatt-tatgcaggggcaggggtttgaacccctgaca 28800021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 32534679 - 32534634
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    |||||||||||||||||| ||||||||||||  ||||||| |||||    
T  32534679 tgagcataactcagttggcagggacatacatggttatatgcagggg 32534634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 48053146 - 48053195
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaagggg 187  Q
    |||||||||||| || |||||||||||||||||||  ||||||| |||||    
T  48053146 cccgtgagcatagcttagttggtagggacatacattcttatatgtagggg 48053195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 4611242 - 4611309
Alignment:
Q  141 gtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||| || ||||||||||||||||| | ||||||| |||| ||||||||||||| ||||| ||||||    
T  4611242 gtgagcttagctcagttggtagggacattgcataatt-tatgtaggggctggggttcgaaccacagaca 4611309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 43712420 - 43712348
Alignment:
Q  129 ataataatacccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaacc 201  Q
    |||||||| | | ||||||||||||||||||||||||||| |||  ||||||  |||||  |||||| |||||    
T  43712420 ataataatcctcatgagcataactcagttggtagggacatgcattgttatatacaggggtcggggttcgaacc 43712348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 18030 - 17959
Alignment:
Q  138 cccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||| |||||||||||| | |||  ||||||| ||||||||||||| ||||||||||||    
T  18030 cccgtgagcatagctcaattggtagggacaatgcattgttatatgcaggggctggggttcgaaccccagaca 17959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 25022 - 25093
Alignment:
Q  138 cccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| ||||||||| ||||||| | ||| |||||||| ||||||||||||| ||||||| ||||    
T  25022 cccgtgagcatagctcagttggcagggacaatgcattattatatgcaggggctggggttcgaaccccggaca 25093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 7072 - 7143
Alignment:
Q  138 cccgtgagcataactcagttggtagggac-atacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||||||| |||||||| ||||||| || ||| |||||||| |||||| |||||| ||||||| ||||    
T  7072 cccgtgagcatagctcagttgttagggacaatgcattattatatgcaggggccggggttcgaaccccggaca 7143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 46526 - 46596
Alignment:
Q  138 cccgtgagcataactcagttggtagggacata-cataattatatgaaggggctggggtttgaaccccagaca 208  Q
    ||||||||| || ||||||||||||||| ||  |||| ||||||| ||||||||||||| ||||||||||||    
T  46526 cccgtgagcttagctcagttggtagggatattgcata-ttatatgcaggggctggggttcgaaccccagaca 46596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 34131 - 34074
Alignment:
Q  138 cccgtgagcataactcagttggtagggacatacataattatatgaaggggctggggtt 195  Q
    |||||||||||| ||||||||| |||||||| |||  ||||||| |||||| ||||||    
T  34131 cccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggtt 34074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 10914 - 10826
Alignment:
Q  120 gtaataattataataatacccgtgagcataactcagttggtagggaca-tacataattatatgaaggggctggggtttgaaccccagaca 208  Q
    |||||||| || ||||| ||||||||| || ||||||||||||||| | | ||| |||||||| |||||| |||||| ||||||| ||||    
T  10914 gtaataataattataatccccgtgagcttagctcagttggtagggatattgcat-attatatgcaggggccggggttcgaaccccggaca 10826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 67162 - 67222
Alignment:
Q  142 tgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccc 202  Q
    |||||||| ||||||||| ||||| || |||  ||||||| ||||||||||||| ||||||    
T  67162 tgagcatagctcagttgggagggatatgcattgttatatgtaggggctggggttcgaaccc 67222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 185607 - 185539
Alignment:
Q  141 gtgagcataactcagttggtagggacatacataattatatgaaggggctggggtttgaaccccagacat 209  Q
    ||||||||| |||||||||||||   | |||| |||||||| |||||| | ||||||||||||| ||||    
T  185607 gtgagcatagctcagttggtaggacaaaacattattatatgcaggggccgaggtttgaaccccaaacat 185539  T

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