View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_128 (Length: 221)

Name: NF19192_high_128
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_128
NF19192_high_128
[»] chr3 (34 HSPs)
chr3 (101-204)||(51975714-51975817)
chr3 (19-100)||(54158266-54158347)
chr3 (19-103)||(7824501-7824585)
chr3 (19-103)||(29689529-29689613)
chr3 (19-103)||(55018081-55018165)
chr3 (19-101)||(28844503-28844585)
chr3 (19-100)||(35461526-35461607)
chr3 (19-100)||(43247697-43247778)
chr3 (19-100)||(52500838-52500919)
chr3 (19-100)||(54151728-54151809)
chr3 (19-105)||(1778846-1778932)
chr3 (19-100)||(4601425-4601506)
chr3 (19-100)||(42392852-42392933)
chr3 (17-100)||(41377584-41377667)
chr3 (22-100)||(51665975-51666053)
chr3 (19-88)||(36229041-36229110)
chr3 (19-103)||(33334605-33334689)
chr3 (39-101)||(28458662-28458724)
chr3 (19-84)||(9349723-9349788)
chr3 (16-99)||(2590845-2590928)
chr3 (21-100)||(50729524-50729603)
chr3 (21-100)||(50783246-50783325)
chr3 (49-96)||(51112541-51112588)
chr3 (19-88)||(448922-448991)
chr3 (19-88)||(3113042-3113111)
chr3 (31-100)||(29750621-29750690)
chr3 (19-100)||(31255406-31255487)
chr3 (57-97)||(31305828-31305868)
chr3 (31-99)||(51054702-51054770)
chr3 (62-96)||(14868945-14868979)
chr3 (58-96)||(47770329-47770367)
chr3 (39-97)||(53182736-53182794)
chr3 (55-100)||(32001507-32001552)
chr3 (52-99)||(44879313-44879361)
[»] chr5 (27 HSPs)
chr5 (19-102)||(1191587-1191670)
chr5 (19-100)||(13203957-13204038)
chr5 (19-101)||(2970983-2971065)
chr5 (19-100)||(21018223-21018304)
chr5 (19-99)||(4824986-4825066)
chr5 (20-100)||(12257356-12257436)
chr5 (19-101)||(35317744-35317826)
chr5 (21-97)||(6020995-6021071)
chr5 (49-101)||(11124651-11124703)
chr5 (20-100)||(21112049-21112129)
chr5 (30-101)||(3386958-3387029)
chr5 (49-100)||(9577038-9577089)
chr5 (47-102)||(40177622-40177677)
chr5 (19-101)||(27721430-27721512)
chr5 (38-100)||(32143468-32143530)
chr5 (19-96)||(8734000-8734077)
chr5 (19-102)||(35545931-35546014)
chr5 (34-100)||(30127894-30127960)
chr5 (19-100)||(29265875-29265956)
chr5 (62-96)||(4444938-4444972)
chr5 (62-99)||(37940918-37940956)
chr5 (19-100)||(2786271-2786352)
chr5 (58-99)||(17984828-17984869)
chr5 (19-68)||(31909432-31909481)
chr5 (56-101)||(38955227-38955272)
chr5 (41-93)||(15206803-15206855)
chr5 (56-100)||(17465091-17465135)
[»] chr8 (34 HSPs)
chr8 (19-101)||(32333113-32333195)
chr8 (19-102)||(28817254-28817337)
chr8 (19-100)||(35779544-35779625)
chr8 (30-100)||(12534776-12534846)
chr8 (19-100)||(6602565-6602646)
chr8 (19-100)||(6678018-6678099)
chr8 (19-100)||(10963287-10963368)
chr8 (19-102)||(1387-1470)
chr8 (19-100)||(7792661-7792742)
chr8 (19-100)||(40911221-40911301)
chr8 (19-101)||(4531029-4531111)
chr8 (19-101)||(42192686-42192768)
chr8 (19-100)||(70570-70651)
chr8 (19-100)||(7813322-7813403)
chr8 (49-105)||(39303304-39303360)
chr8 (58-101)||(22979603-22979646)
chr8 (19-100)||(1078695-1078776)
chr8 (49-102)||(6099570-6099623)
chr8 (47-100)||(9292018-9292071)
chr8 (19-100)||(39435282-39435363)
chr8 (20-100)||(31969768-31969848)
chr8 (30-101)||(3822395-3822466)
chr8 (58-100)||(41753066-41753108)
chr8 (48-102)||(42364777-42364831)
chr8 (49-101)||(29425356-29425408)
chr8 (19-102)||(31695316-31695399)
chr8 (19-101)||(45264687-45264768)
chr8 (19-104)||(18386704-18386789)
chr8 (17-101)||(41849276-41849360)
chr8 (41-100)||(20269542-20269601)
chr8 (41-100)||(21056171-21056230)
chr8 (19-82)||(42885192-42885255)
chr8 (62-99)||(10096612-10096650)
chr8 (19-72)||(31532172-31532225)
[»] scaffold0119 (2 HSPs)
scaffold0119 (19-100)||(13998-14079)
scaffold0119 (19-100)||(19678-19759)
[»] chr4 (35 HSPs)
chr4 (19-100)||(19849550-19849631)
chr4 (19-100)||(32441131-32441212)
chr4 (19-101)||(18257328-18257410)
chr4 (19-100)||(34739280-34739361)
chr4 (19-100)||(45874055-45874136)
chr4 (22-102)||(28798438-28798518)
chr4 (19-101)||(1173950-1174032)
chr4 (19-97)||(22607988-22608066)
chr4 (19-105)||(53457819-53457905)
chr4 (20-97)||(3465755-3465832)
chr4 (19-100)||(23710380-23710461)
chr4 (19-100)||(43139953-43140034)
chr4 (19-100)||(54768479-54768560)
chr4 (19-103)||(19673976-19674060)
chr4 (19-98)||(19225261-19225340)
chr4 (19-101)||(11277981-11278063)
chr4 (19-101)||(12735430-12735512)
chr4 (19-100)||(26424905-26424985)
chr4 (24-92)||(23417535-23417603)
chr4 (19-101)||(12867840-12867922)
chr4 (19-100)||(55214652-55214733)
chr4 (20-100)||(2864796-2864876)
chr4 (19-103)||(19814102-19814186)
chr4 (19-101)||(238505-238587)
chr4 (19-100)||(22910304-22910385)
chr4 (19-100)||(22968137-22968218)
chr4 (30-101)||(49030796-49030863)
chr4 (19-93)||(52172037-52172111)
chr4 (31-100)||(55400228-55400297)
chr4 (19-103)||(29581090-29581174)
chr4 (62-101)||(12767086-12767125)
chr4 (55-102)||(23532071-23532118)
chr4 (31-97)||(23858481-23858547)
chr4 (30-100)||(37134048-37134118)
chr4 (49-105)||(19119139-19119195)
[»] chr2 (34 HSPs)
chr2 (19-100)||(26605624-26605705)
chr2 (19-101)||(19537306-19537388)
chr2 (19-101)||(10639653-10639735)
chr2 (19-101)||(11708677-11708759)
chr2 (19-101)||(39535581-39535663)
chr2 (19-100)||(19048754-19048835)
chr2 (19-100)||(23839859-23839940)
chr2 (19-100)||(33083601-33083682)
chr2 (21-105)||(19816215-19816299)
chr2 (30-102)||(34460367-34460439)
chr2 (19-101)||(11459714-11459796)
chr2 (19-100)||(39831491-39831571)
chr2 (19-101)||(11816598-11816680)
chr2 (47-101)||(45125240-45125294)
chr2 (19-104)||(4851316-4851401)
chr2 (19-88)||(37197657-37197726)
chr2 (20-100)||(34234530-34234610)
chr2 (19-94)||(21312211-21312286)
chr2 (30-101)||(29659276-29659347)
chr2 (57-100)||(42578180-42578223)
chr2 (19-103)||(16654360-16654444)
chr2 (56-103)||(4800873-4800920)
chr2 (49-96)||(25501860-25501907)
chr2 (29-100)||(40786266-40786337)
chr2 (21-103)||(38440246-38440328)
chr2 (19-100)||(7349098-7349179)
chr2 (61-102)||(13106354-13106395)
chr2 (31-100)||(45201931-45202000)
chr2 (19-101)||(7275933-7276016)
chr2 (55-101)||(14308818-14308864)
chr2 (62-96)||(21840539-21840573)
chr2 (63-96)||(42025674-42025707)
chr2 (55-96)||(43684073-43684114)
chr2 (49-97)||(32844654-32844702)
[»] chr1 (28 HSPs)
chr1 (19-100)||(28455874-28455955)
chr1 (19-100)||(29994430-29994511)
chr1 (19-102)||(41761458-41761541)
chr1 (19-102)||(48660020-48660103)
chr1 (19-93)||(39276357-39276431)
chr1 (19-100)||(32007074-32007155)
chr1 (19-97)||(29587255-29587333)
chr1 (19-100)||(5055835-5055916)
chr1 (19-100)||(41808202-41808283)
chr1 (19-101)||(45813058-45813140)
chr1 (19-100)||(192415-192496)
chr1 (19-101)||(46447424-46447506)
chr1 (19-100)||(20748-20829)
chr1 (31-99)||(5943682-5943750)
chr1 (19-99)||(35945798-35945878)
chr1 (19-101)||(50106243-50106325)
chr1 (31-100)||(2088964-2089033)
chr1 (32-100)||(11688263-11688331)
chr1 (58-102)||(45294656-45294700)
chr1 (22-101)||(4065960-4066039)
chr1 (19-102)||(49783705-49783788)
chr1 (19-101)||(39284289-39284371)
chr1 (55-98)||(21938944-21938987)
chr1 (49-100)||(25931226-25931277)
chr1 (59-102)||(34121643-34121686)
chr1 (19-76)||(7059491-7059548)
chr1 (48-101)||(7275680-7275733)
chr1 (54-102)||(32982432-32982480)
[»] chr7 (37 HSPs)
chr7 (19-101)||(44083939-44084021)
chr7 (19-100)||(40058238-40058319)
chr7 (30-102)||(2146634-2146706)
chr7 (19-103)||(31770579-31770663)
chr7 (19-102)||(23358183-23358266)
chr7 (25-99)||(47250304-47250378)
chr7 (19-100)||(4106738-4106819)
chr7 (19-100)||(7162835-7162916)
chr7 (19-101)||(25546322-25546404)
chr7 (27-99)||(42081671-42081743)
chr7 (19-102)||(25112294-25112377)
chr7 (19-94)||(27229525-27229600)
chr7 (30-101)||(40642973-40643044)
chr7 (19-85)||(4107324-4107390)
chr7 (19-93)||(29484802-29484876)
chr7 (19-96)||(43753801-43753878)
chr7 (19-102)||(8439076-8439159)
chr7 (57-100)||(34763454-34763497)
chr7 (30-100)||(29255717-29255787)
chr7 (19-101)||(38033728-38033810)
chr7 (19-89)||(5587291-5587361)
chr7 (19-89)||(5592252-5592322)
chr7 (22-100)||(43203306-43203384)
chr7 (31-100)||(5772878-5772947)
chr7 (21-102)||(47961004-47961085)
chr7 (58-102)||(28111017-28111061)
chr7 (30-102)||(32606388-32606460)
chr7 (49-101)||(43171016-43171068)
chr7 (19-99)||(48146754-48146834)
chr7 (30-102)||(48444210-48444282)
chr7 (21-100)||(4001891-4001970)
chr7 (29-100)||(25872763-25872834)
chr7 (19-97)||(13887174-13887252)
chr7 (19-100)||(11355823-11355904)
chr7 (19-100)||(47557781-47557862)
chr7 (57-101)||(27915666-27915710)
chr7 (73-105)||(34708667-34708699)
[»] scaffold0032 (1 HSPs)
scaffold0032 (19-100)||(56481-56562)
[»] chr6 (18 HSPs)
chr6 (19-102)||(33621492-33621575)
chr6 (19-100)||(28322932-28323013)
chr6 (19-100)||(33704216-33704297)
chr6 (19-100)||(4464127-4464208)
chr6 (19-100)||(11572008-11572089)
chr6 (19-100)||(21000692-21000773)
chr6 (38-100)||(35218694-35218756)
chr6 (32-100)||(21037291-21037359)
chr6 (58-102)||(14939146-14939190)
chr6 (55-101)||(2959148-2959194)
chr6 (20-100)||(10226540-10226620)
chr6 (49-88)||(5598852-5598891)
chr6 (63-102)||(28592207-28592246)
chr6 (55-101)||(361010-361056)
chr6 (58-100)||(7487350-7487392)
chr6 (19-100)||(4610872-4610952)
chr6 (55-100)||(24619162-24619207)
chr6 (19-100)||(33255489-33255569)
[»] scaffold1348 (1 HSPs)
scaffold1348 (19-100)||(909-990)
[»] scaffold0038 (1 HSPs)
scaffold0038 (19-100)||(114252-114333)
[»] scaffold0044 (1 HSPs)
scaffold0044 (20-100)||(10021-10101)
[»] scaffold0360 (1 HSPs)
scaffold0360 (19-100)||(14495-14576)
[»] scaffold0352 (1 HSPs)
scaffold0352 (19-100)||(8990-9071)
[»] scaffold0067 (1 HSPs)
scaffold0067 (49-96)||(34822-34869)
[»] scaffold0053 (1 HSPs)
scaffold0053 (19-89)||(22174-22244)
[»] scaffold0495 (1 HSPs)
scaffold0495 (20-100)||(3259-3339)
[»] scaffold0778 (1 HSPs)
scaffold0778 (62-99)||(818-856)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 6e-33; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 51975817 - 51975714
Alignment:
Q  101 aatatgtattctttctatatctatatattaattttaataaaatgatttaggatatagtgatattgacttaggatctgagaattaatttctcaaattcgat 200  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||  |||||||||| ||    
T  51975817 aatatgtattctttcaatatctatatattaattctaataaaatgatttaggatatagtggtattgacttagaatctgagaatcaaggtctcaaattcaat 51975718  T
Q  201 tctt 204  Q
    ||||    
T  51975717 tctt 51975714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 54158347 - 54158266
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||||||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  54158347 gtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54158266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 7824501 - 7824585
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7824501 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaat 7824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29689529 - 29689613
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29689529 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaat 29689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 55018081 - 55018165
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  55018081 gtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttgacatttgccagttgagttaggacttctagacaat 55018165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 28844585 - 28844503
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||| |||||||||||||||| || ||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||    
T  28844585 gtgaggttccaggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctagaacttctagaca 28844503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35461526 - 35461607
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| || |||||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||    
T  35461526 gtgaggttccgggttcgaacccggatcacaacgtccgaccttgcaatttcggcatttgccagttgagctagaacttctagac 35461607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 43247697 - 43247778
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||| | || ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  43247697 gtgaggtcccgggttcgaacccaggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 43247778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 52500919 - 52500838
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||  ||||||||||||||||||   ||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  52500919 gtgaggtttcaggttcgaacccggatcatgacgtccggccttacaatttcgacatttgccagttgagctaggacttctagac 52500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 54151728 - 54151809
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  54151728 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 1778932 - 1778846
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaatat 105  Q
    ||||||| || ||||||||||||| || ||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||| ||||    
T  1778932 gtgaggttccgggttcgaacccgggtcacaatgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagacgatat 1778846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 4601506 - 4601425
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| || ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  4601506 gtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 4601425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 42392852 - 42392933
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||| ||||||||   ||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  42392852 gtgaggtcccgggttcgagcccggatcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 42392933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 41377667 - 41377584
Alignment:
Q  17 cagtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||| |||||||||| |||||   ||||| |||||| |||||| | ||||||||||||||||||||||||||||||    
T  41377667 cagtgaggtcccgggttcgaacctggatcatgacgtccggccttacaattttggcatttgccagttgagctaggacttctagac 41377584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 51665975 - 51666053
Alignment:
Q  22 aggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| ||||||||||| | ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  51665975 aggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 51666053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 36229041 - 36229110
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagcta 88  Q
    |||||||||| ||||||||||||||||   ||||| ||||||||||||||| ||||||||||||||||||    
T  36229041 gtgaggtcccgggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagcta 36229110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 33334689 - 33334605
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| | ||||||| | | || ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||    
T  33334689 gtgaggtcccggattcgaactcaggtcacaacgtccggctttgcaatttcggcatttgcaagttgagctaggacttctagacaat 33334605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 28458724 - 28458662
Alignment:
Q  39 ccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||| | || ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  28458724 ccggatcacgacatctggccttgcaatttcgacatttgtcagttgagttaggacttctagaca 28458662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 9349723 - 9349788
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttga 84  Q
    |||||||||| |||||||||||||||| | ||||| | ||||||||||||| ||||||||||||||    
T  9349723 gtgaggtcccgggttcgaacccggatcacgacgtccgaccttgcaatttcggcatttgccagttga 9349788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 2590845 - 2590928
Alignment:
Q  16 tcagtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    ||||||||||||  ||||||||||| |||| | | ||  ||||||||||||||||||||| ||||||||| |||||||| ||||    
T  2590845 tcagtgaggtccagggttcgaacccagatcacgatgttcggccttgcaatttcgacattttccagttgagttaggacttataga 2590928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 50729603 - 50729524
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| || ||||||| || |||| | ||||||| |||| |||||||| |||||| |||||||||||| ||||||||||    
T  50729603 gaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaacttctagac 50729524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 50783246 - 50783325
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| || ||||||| || |||| | ||||||| |||| |||||||| |||||| |||||||||||| ||||||||||    
T  50783246 gaggtctcatgttcgaatccagatcacgacgtctgaccttacaatttcggcatttgtcagttgagctagaacttctagac 50783325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 51112541 - 51112588
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  51112541 acgtccggcctagcaatttcggcatttgccagttgagctaggacttct 51112588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 448922 - 448991
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagcta 88  Q
    ||||||||| |||||||||  |||||| | ||||| |||||| |||||| |||||||| |||||||||||    
T  448922 gtgaggtcctaggttcgaattcggatcacgacgtccggccttacaattttgacatttgtcagttgagcta 448991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 3113042 - 3113111
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagcta 88  Q
    ||||| |||| ||||||||| ||| |  | ||||| ||||||||||||||| ||||||||||||||||||    
T  3113042 gtgagatcccgggttcgaactcgggttacgacgtccggccttgcaatttcggcatttgccagttgagcta 3113111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 29750690 - 29750621
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| |||| || | |||||  |||||||||||||| ||||||||||||||| ||| ||||||||||    
T  29750690 gttcgaatccgggtcacgacgtccagccttgcaatttcggcatttgccagttgagttagtacttctagac 29750621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 31255487 - 31255406
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| ||| ||||||||||||| || | |||||  || ||  |||||||||||||| |||||||| ||||||||||||||    
T  31255487 gtgaggacccgggttcgaacccgggtcacgacgtccagctttataatttcgacatttgtcagttgagttaggacttctagac 31255406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 31305828 - 31305868
Alignment:
Q  57 ccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  31305828 ccttgcaatttcgacatttgccaattgagctaagacttcta 31305868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 51054770 - 51054702
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    ||||||||||| |||  |||||  | ||||| |||||||||||||| |||||||| |||||||||||||    
T  51054770 gttcgaacccgaatcataacgttcgaccttgtaatttcgacatttgtcagttgagttaggacttctaga 51054702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 14868945 - 14868979
Alignment:
Q  62 caatttcgacatttgccagttgagctaggacttct 96  Q
    |||||||| ||||||||||||||||||||||||||    
T  14868945 caatttcggcatttgccagttgagctaggacttct 14868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 47770367 - 47770329
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  47770367 cttgcaatttcgacatttatcagttgagctaggacttct 47770329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 53182794 - 53182736
Alignment:
Q  39 ccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||| | |||||||    
T  53182794 ccggatcacaacgtctgaccttgcaatttcagcatttgccagttgtgctcgaacttcta 53182736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 32001507 - 32001552
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  32001507 ggccttacaatttcggcatttaccagttgaggtaggacttctagac 32001552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 44879313 - 44879361
Alignment:
Q  52 tctggccttgcaatttcgacattt-gccagttgagctaggacttctaga 99  Q
    ||||||||  |||||||||||||| ||||||||| ||||||||||||||    
T  44879313 tctggcctaacaatttcgacattttgccagttgaactaggacttctaga 44879361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 1191587 - 1191670
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1191587 gtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgtcatttgccagttgagctaggacttctagacaa 1191670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 13204038 - 13203957
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  13204038 gtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 13203957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 2971065 - 2970983
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||| ||||||||||||||| || ||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||    
T  2971065 gtgaggtctcaggttcgaacccgggtcacaacgtctgaccttacaatttcgacatttatcagttgagctaggacttctagaca 2970983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 21018304 - 21018223
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||    
T  21018304 gtgaggtcccgggttcgaacccgggtcacaacgtccggcctcgcaattttggcatttgccagttgagctaggacttctagac 21018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 4824986 - 4825066
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    |||||||||| |||| ||||| || || ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4824986 gtgaggtcccgggtttgaacctgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 4825066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 12257436 - 12257356
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||  ||||||||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  12257436 tgaggtcctgggttcgaacccaggtcacaacgtctggccttacaatttcggcatttgccagttgagctaggacttctagac 12257356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 35317744 - 35317826
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||| ||| | ||  |||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  35317744 gtgaggtcccgggttcgaccccaggtcataacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagaca 35317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 6021071 - 6020995
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    |||||||| |||||||| |||| || ||||||| ||||||||||||| ||||||||||| ||||| |||||||||||    
T  6021071 gaggtcccgggttcgaatccgggtcacaacgtcaggccttgcaattttgacatttgccaattgagttaggacttcta 6020995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 11124703 - 11124651
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  11124703 acgtccggccttgcaattttgacatttgccagttgagctaggacttctagaca 11124651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 21112129 - 21112049
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||||||||  | || | |||| || |||||||||||||||||||| ||| |||||||||||||||||||    
T  21112129 tgaggtcccaggttcgaacctaggtcacgacgtatgtccttgcaatttcgacatttgtcagctgagctaggacttctagac 21112049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 3386958 - 3387029
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||||||||  | ||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  3386958 ggttcgaacccggataacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttttagaca 3387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 9577038 - 9577089
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  9577038 acgtctggccttgcaatttcagcatttgccagttgagctaggacttctagac 9577089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 40177677 - 40177622
Alignment:
Q  47 caacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||    
T  40177677 caacgtccggccttgcaatttcgacatttgtcagttaagctaggacttctagacaa 40177622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 27721512 - 27721430
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||| ||||||| || | ||||| | | ||||||||||| ||||| |||||||||||||||||||||||||    
T  27721512 gtgaggtcccgggttcaaacccgggtcacgacgtccgactttgcaatttcggcattttccagttgagctaggacttctagaca 27721430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 32143468 - 32143530
Alignment:
Q  38 cccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| || ||||||| ||||||||||||| | |||||||||||||||||| |||||||||||    
T  32143468 cccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctatgacttctagac 32143530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 8734077 - 8734000
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||||| || ||||||||||  | || | ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  8734077 gtgaggttccgggttcgaacctaggtcacgacgtccggccttgcaatttcagcatttgccagttgagctaggacttct 8734000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 35546014 - 35545931
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||||||||||||  |||||| | ||||  ||  ||||||||||| |||||| |||||||| ||| ||||||||||||    
T  35546014 gtgaggtcccaggttcgaattcggatcacgacgttcggttttgcaatttcggcatttgtcagttgagttagaacttctagacaa 35545931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 30127960 - 30127894
Alignment:
Q  34 cgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||| || | | ||| ||||||||||||||| ||||| | ||||||||||||||||||||||    
T  30127960 cgaacccgggtcacgatgtccggccttgcaatttcggcatttacaagttgagctaggacttctagac 30127894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 29265956 - 29265875
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||| |||| || |||| |  | ||||| ||||||||||||| | ||||||| ||||||||||||||    
T  29265956 gtgaggtcccgggttcgaatccgggtcacaacattcgaccttgtaatttcgacattttctagttgagttaggacttctagac 29265875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 4444938 - 4444972
Alignment:
Q  62 caatttcgacatttgccagttgagctaggacttct 96  Q
    |||||||| ||||||||||||||||||||||||||    
T  4444938 caatttcggcatttgccagttgagctaggacttct 4444972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 37940956 - 37940918
Alignment:
Q  62 caatttcgacattt-gccagttgagctaggacttctaga 99  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37940956 caatttcgacattttgccagttgagctaggacttctaga 37940918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 2786352 - 2786271
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||| |||  |||||| |  |||| | |||| |||||||| ||||||||| ||||  ||||||||||||||    
T  2786352 gtgaggtcccaggtttgaattcggatcacggcgtccgaccttacaatttcggcatttgccaattgaattaggacttctagac 2786271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 17984828 - 17984869
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  17984828 cttgcaatttcgacctttttcagttgagctaggacttctaga 17984869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 31909432 - 31909481
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttc 68  Q
    |||||||||| ||||||||||||| ||   ||||||||||||||||||||    
T  31909432 gtgaggtcccgggttcgaacccgggtcatgacgtctggccttgcaatttc 31909481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 38955272 - 38955227
Alignment:
Q  56 gccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||||||| ||||| | ||||||||||| |||||||||||    
T  38955272 gccttgcaatttcggcatttactagttgagctagaacttctagaca 38955227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 15206803 - 15206855
Alignment:
Q  41 ggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggact 93  Q
    ||||| |||| |||| | ||||||||||| ||||| |||||||||||||||||    
T  15206803 ggatcacaacatctgactttgcaatttcggcatttaccagttgagctaggact 15206855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 17465135 - 17465091
Alignment:
Q  56 gccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||| ||||||| || ||||||||||||| |||||    
T  17465135 gccttgcaatttcggcatttgctagctgagctaggacttttagac 17465091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 32333195 - 32333113
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  32333195 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 32333113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 28817337 - 28817254
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||| |||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28817337 gtgagatcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaa 28817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35779544 - 35779625
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  35779544 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 35779625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 12534776 - 12534846
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  12534776 ggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 12534846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 6602565 - 6602646
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6602565 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6602646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 6678018 - 6678099
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  6678018 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 6678099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 10963287 - 10963368
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||| ||||| ||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  10963287 gtgaggtcccgggttcgaacctggatcacaacgttcggccttgtaatttcggcatttgccagttgagctaggacttctagac 10963368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 1387 - 1470
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| |||||||||| || || ||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  1387 gtgaggtcccgggttcgaaccagggtcacaacgtccggccttgcaattttggcatttgccagttgagctagaacttctagacaa 1470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 7792742 - 7792661
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| |||| ||||||||||||  || |||||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  7792742 gtgagatcccgggttcgaacccgagtcacaacgtccagccttgcaatttcggcatttgccagttgagctaggacttctagac 7792661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 40911301 - 40911221
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  40911301 gtgaggtccc-ggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgagctagcacttctagac 40911221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 4531029 - 4531111
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| ||   |||||  |||||||||||||| ||||||||| |||||||||||||||||||||    
T  4531029 gtgaggtcccgggttcgaacccgggtcatgacgtccagccttgcaatttcggcatttgccaattgagctaggacttctagaca 4531111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 42192686 - 42192768
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| |||| ||||||||| ||| ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  42192686 gtgagatcccgggttcgaactcgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 42192768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 70570 - 70651
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||| ||||||| ||   ||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  70570 gtgaggtcccgggttcaaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 70651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 7813403 - 7813322
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||  || |||| || ||||||||||||||  |||||||| |||||||||||||||||||||    
T  7813403 gtgaggtcccgggttcgaacccgagtcacaacatccggccttgcaatttcagcatttgccggttgagctaggacttctagac 7813322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 39303360 - 39303304
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaatat 105  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  39303360 acgtccggccttgcaatttcggcatttgccagttgagctaggacttcttgacaatat 39303304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 22979646 - 22979603
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22979646 cttgcaatttcgacatttgccagttgagctaggacttctagaca 22979603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 1078695 - 1078776
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||| || ||   ||||| ||||||||||||||| ||||| |||||||||||| |||||||||||    
T  1078695 gtgaggtcccgggttcgaacctgggtcatgacgtccggccttgcaatttcggcatttaccagttgagctacgacttctagac 1078776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 6099623 - 6099570
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||||    
T  6099623 acgtccggccttgcaatttcgacatttgcaagttgaactaggacttctagacaa 6099570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 9292071 - 9292018
Alignment:
Q  47 caacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||||||||||    
T  9292071 caacgtccggctttacaatttcgacatttgccagttgagctaggacttctagac 9292018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 39435363 - 39435282
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||| | ||||||||||| ||||   ||||| | ||||||||||| ||||||||||||||||||||| ||||||||||    
T  39435363 gtgaggtctcgggttcgaacccagatcatgacgtccgaccttgcaattttgacatttgccagttgagctagaacttctagac 39435282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 31969768 - 31969848
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||  |||||||||||||||   ||||||||||||| ||||||| ||||||||| || ||||| |||||||||||    
T  31969768 tgaggtcccgtgttcgaacccggatcatgacgtctggccttgaaatttcggcatttgccaattaagctatgacttctagac 31969848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 3822466 - 3822395
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||| || ||||||| | |||| |||||||| |||||||||||||| |||| |||||||||||    
T  3822466 ggttcgaacccgggtcacaacgtccgaccttacaatttcggcatttgccagttgaactagaacttctagaca 3822395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 41753066 - 41753108
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  41753066 cttgcaatttcgacatttgtcagttgagctaggacttctagac 41753108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 42364777 - 42364831
Alignment:
Q  48 aacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| ||||||||||| |||||| |||||||| ||||||||||||||||    
T  42364777 aacgtctggctttgcaatttcggcatttggcagttgagataggacttctagacaa 42364831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 29425408 - 29425356
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| ||||||||||||| | ||||||||| |||||||||||||||||||||    
T  29425408 acgtccggccttgcaattttggcatttgccaattgagctaggacttctagaca 29425356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 31695316 - 31695399
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||||||||||| ||| |||   || ||   ||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  31695316 gtgaggtcccaggttcgaatccgaatcatgacatccaaccttgcaattttgacatgtgccagttgagctagaacttctagacaa 31695399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 45264687 - 45264768
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||  || | ||||  | ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  45264687 gtgaggtcccgggttcgaacccgagtcacgacgttcgacct-gcaatttcggcatttgccagttgagttaggacttctagaca 45264768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 18386789 - 18386704
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaata 104  Q
    |||||||||| ||||||||||||  ||   || || | ||||||||||||  |||||| |||||||||||| ||||||||||||||    
T  18386789 gtgaggtcccgggttcgaacccgagtcatgacatccgaccttgcaatttcagcatttgtcagttgagctagaacttctagacaata 18386704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 41849276 - 41849360
Alignment:
Q  17 cagtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||| || | ||||||||| |||| | ||||| | ||||||||||||| ||||||||||||||  || |||||| |||||    
T  41849276 cagtgaggttccggattcgaacccagatcacgacgtccgaccttgcaatttcggcatttgccagttgaattaagacttccagaca 41849360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 20269601 - 20269542
Alignment:
Q  41 ggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| ||||||| |||||| ||||||||  ||||||||||||||||| ||||| |||||    
T  20269601 ggatcacaacgtccggccttacaatttcggtatttgccagttgagctaagacttttagac 20269542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 21056230 - 21056171
Alignment:
Q  41 ggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| ||||||| |||||| ||||||||  ||||||||||||||||| ||||| |||||    
T  21056230 ggatcacaacgtccggccttacaatttcggtatttgccagttgagctaagacttttagac 21056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 42885255 - 42885192
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagtt 82  Q
    ||||| |||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||    
T  42885255 gtgagatcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagtt 42885192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 10096650 - 10096612
Alignment:
Q  62 caatttcgacattt-gccagttgagctaggacttctaga 99  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10096650 caatttcgacattttgccagttgagctaggacttctaga 10096612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 31532172 - 31532225
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgaca 72  Q
    |||||||||| ||||| || |||| || ||||||| ||||||||||||||||||    
T  31532172 gtgaggtccccggttcaaatccgggtcacaacgtccggccttgcaatttcgaca 31532225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 13998 - 14079
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  13998 gtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 14079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 19678 - 19759
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  19678 gtgaggtcccgggttcgaacccggatcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagac 19759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 19849550 - 19849631
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  19849550 gtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 19849631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 32441131 - 32441212
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32441131 gtgaggtcccgggttcgaacccgggtcatgatgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 32441212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 18257410 - 18257328
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| || |||||||||||||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  18257410 gtgaggtcccgggctcgaacccggatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 18257328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 34739361 - 34739280
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  34739361 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 34739280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 45874136 - 45874055
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||| | |||||| |||||||||||||||||||||||    
T  45874136 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgtcagttgagctaggacttctagac 45874055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 28798438 - 28798518
Alignment:
Q  22 aggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| ||||||||||||| || | ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  28798438 aggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagacaa 28798518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 1174032 - 1173950
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||| | ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  1174032 gtgaggtcccgggttcgaacccaggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 1173950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 22608066 - 22607988
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  22608066 gtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatctgtcagttgagctaggacttcta 22607988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 53457905 - 53457819
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaatat 105  Q
    |||||||||| | ||||||||||| ||   ||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  53457905 gtgaggtcccggattcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagacaatat 53457819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 3465832 - 3465755
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    |||||||||  ||||||||| ||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  3465832 tgaggtcccgagttcgaacctggatcacaacgtccggccttgcaatttcgatatttgctagttgagctaggacttcta 3465755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 23710380 - 23710461
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| ||||||||||| |||| || | ||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  23710380 gtgaggttccaggttcgaatccgggtcacgacgtccggccttgcaatttcgacatttaccagttgagctatgacttctagac 23710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 43139953 - 43140034
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  43139953 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctagaacttctagac 43140034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 54768479 - 54768560
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||  ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  54768479 gtgaggtcctgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 54768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 19673976 - 19674060
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| ||||||||||| | || ||||||  |||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  19673976 gtgaggtcccgggttcgaacccaggtcacaacgttcggccttgcaatttctacatttaccagttgagctaagacttctagacaat 19674060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 19225340 - 19225261
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctag 98  Q
    |||||||||| ||||||||||||||||   ||||| ||| || |||||||| ||||||||||||||||||||||||||||    
T  19225340 gtgaggtcccgggttcgaacccggatcatgacgtccggctttacaatttcggcatttgccagttgagctaggacttctag 19225261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 11278063 - 11277981
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| |||| |||||||| ||   | ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  11278063 gtgaggtcccgggtttgaacccgggtcatgatgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 11277981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 12735512 - 12735430
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||  ||||||||||||| || |||||||||||||| |||||| | |||||| |||||||||||| |||||||||||    
T  12735512 gtgaggtcctgggttcgaacccgggtcacaacgtctggccttacaattttggcatttgtcagttgagctagtacttctagaca 12735430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 26424905 - 26424985
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  26424905 gtgaggtcccgggttcgaacccgggtcatgacgtccg-ccttgcaatttcggcatttgccagttgagctaggacttctagac 26424985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 23417535 - 23417603
Alignment:
Q  24 gtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggac 92  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||||||||||    
T  23417535 gtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggac 23417603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 12867922 - 12867840
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| |||||||||||||| ||| || | ||||| | ||||||||||||| |||||| |||||||||||| |||||||||||    
T  12867922 gtgagatcccaggttcgaactcgggtcacgacgtccgaccttgcaatttcggcatttgacagttgagctagaacttctagaca 12867840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 55214733 - 55214652
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||| | |||||| |||||||| || |||||||||||    
T  55214733 gtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaattttggcatttgacagttgagttaagacttctagac 55214652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 2864796 - 2864876
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| | |||||||||||||| || | |||||  |||||||||||| | ||||||||||||||| ||||||||||||||    
T  2864796 tgaggttctaggttcgaacccgggtcacgacgtcccgccttgcaatttaggcatttgccagttgagttaggacttctagac 2864876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 19814186 - 19814102
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    ||||||||||||||| |||||| | || | ||||| |||||| |||||||  |||||||||||||||||| |||||||| |||||    
T  19814186 gtgaggtcccaggtttgaacccaggtcacgacgtccggccttacaatttctgcatttgccagttgagctaagacttctaaacaat 19814102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 238505 - 238587
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||| | ||    ||||  |||||||||||||| |||||| ||||||||||||||||||||||||    
T  238505 gtgaggtcccgggttcgaacccaggtcatggcgtccagccttgcaatttcggcatttgacagttgagctaggacttctagaca 238587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 22910304 - 22910385
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| |||||||||||||||||| || | ||||| | ||||||||||||||| |||| |||||||||   |||||||||||    
T  22910304 gtgagatcccaggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttgagcggagacttctagac 22910385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 22968218 - 22968137
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| |||||||||||||||||| || | ||||| | ||||||||||||||| |||| |||||||||   |||||||||||    
T  22968218 gtgagatcccaggttcgaacccgggtcacgacgtccgaccttgcaatttcgacttttgtcagttgagcggagacttctagac 22968137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 49030796 - 49030863
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||| |||||| | ||||| |||||||||||||||||||||||||     |||||||||||||||||    
T  49030796 ggttcgaactcggatcacgacgtccggccttgcaatttcgacatttgcca----tgctaggacttctagaca 49030863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 52172037 - 52172111
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggact 93  Q
    ||||||| | |||||| |||||| ||| | |||||||||||| |||||| ||||||||||| ||||||| |||||    
T  52172037 gtgaggttctaggttcaaacccgaatcacgacgtctggccttacaattttgacatttgccaattgagcttggact 52172111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 55400297 - 55400228
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| |||||||   ||||| ||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  55400297 gttcgaatccggatcatgacgtccggccttgcaatttcggcatttaccagttgagttaggatttctagac 55400228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 29581090 - 29581174
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||| | ||||||||||  | || | ||||| ||||||||||||||| ||| || || |||||||||||||||| ||||||    
T  29581090 gtgaggtctcgggttcgaacctaggtcacgacgtccggccttgcaatttcggcatctgacaattgagctaggacttcttgacaat 29581174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 12767125 - 12767086
Alignment:
Q  62 caatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  12767125 caatttcggcatttaccagttgagctaggacttctagaca 12767086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 23532118 - 23532071
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||||||||||||||| |||||||| ||| |||| |||||||    
T  23532118 ggccttgcaatttcgacatttgtcagttgagttagaacttttagacaa 23532071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 23858547 - 23858481
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    ||||||||||||||| |||| |  |||||| ||||||  ||||||| |||||||||||||| |||||    
T  23858547 gttcgaacccggatcacaacttacggccttacaattttaacatttgtcagttgagctaggaattcta 23858481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 37134118 - 37134048
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||||   || || | ||||| ||||||  |||||||||||||| |||||||||||||||    
T  37134118 ggttcgaacccggatcatgacatccgaccttgtaatttcagcatttgccagttgaactaggacttctagac 37134048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 19119195 - 19119139
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaatat 105  Q
    ||||| ||||||| ||||| |||||||  ||||||| ||| ||||||||||||||||    
T  19119195 acgtccggccttgtaattttgacatttatcagttgaactaagacttctagacaatat 19119139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 26605705 - 26605624
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  26605705 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 26605624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 19537388 - 19537306
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||| || |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  19537388 gtgaggttccgggttcgaacccggatcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagaca 19537306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 10639653 - 10639735
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10639653 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagaca 10639735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 11708759 - 11708677
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||  ||||||||||||| || ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  11708759 gtgaggtcctgggttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttctagaca 11708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 39535581 - 39535663
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| || | ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  39535581 gtgaggtcccgggttcgaacccgggtcacgacgtccggccttgcaatttcgacatttgctagttgagttaggacttctagaca 39535663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 19048835 - 19048754
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||||||   ||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  19048835 gtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 19048754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 23839940 - 23839859
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||||||||| | || ||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  23839940 gtgaggtcccaggttcgaacccaggtcacaacgtccggccttgcaattttggcatttgccagttgagttaggacttctagac 23839859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 33083601 - 33083682
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33083601 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33083682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 19816299 - 19816215
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaatat 105  Q
    ||||| || ||||| ||||||| || ||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  19816299 gaggttccgggttcaaacccgggtcacaacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagacaatat 19816215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 34460439 - 34460367
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||||| || ||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  34460439 ggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgtcagttgagctaggacttctagacaa 34460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 11459796 - 11459714
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| ||   ||||| | ||||||||||||| |||||||||||||||||||||||||||||||    
T  11459796 gtgaggtcccgggttcgaacccgggtcatgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagaca 11459714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 39831491 - 39831571
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||||||   ||||| |||||||||||||||  ||||||||||||||||||||||| |||||    
T  39831491 gtgaggtccc-ggttcgaacccggatcatgacgtccggccttgcaatttcggtatttgccagttgagctaggacttatagac 39831571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 11816598 - 11816680
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||| || ||||||||||| | || | ||||| | ||||||||||||| |||||||||||||||||||||||||| ||||    
T  11816598 gtgaggttccgggttcgaacccaggtcacgacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctggaca 11816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 45125240 - 45125294
Alignment:
Q  47 caacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  45125240 caacgtccggccttacaatttcggcatttgccagttgagctaggacttctagaca 45125294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 4851401 - 4851316
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaata 104  Q
    |||||||||| |||| ||||||||||| | ||||| ||| || |||||||| || ||| |||||||||||||||||| ||||||||    
T  4851401 gtgaggtcccgggtttgaacccggatcacgacgtccggctttacaatttcggcaattgacagttgagctaggacttcaagacaata 4851316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 37197657 - 37197726
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagcta 88  Q
    |||||||||| ||||||||||||| || | |||||  |||||||||||||| ||||||||||||||||||    
T  37197657 gtgaggtcccgggttcgaacccgggtcacgacgtccagccttgcaatttcggcatttgccagttgagcta 37197726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 34234610 - 34234530
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| | ||||| ||| | |||| |||| || | ||||||||||||| ||||||||||||||||||||||||||||||    
T  34234610 tgaggtctcgggttcaaactcagatcacaacatccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 34234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 21312286 - 21312211
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggactt 94  Q
    |||||||||||||||||| ||| |||| ||||||| || ||| |||||| ||||||||||| ||||||||| ||||    
T  21312286 gtgaggtcccaggttcgatcccagatcacaacgtccggtcttacaattttgacatttgccaattgagctagaactt 21312211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 29659276 - 29659347
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||| || ||| ||  |||||| |||||| | |||||||||||||||||||||||||||||||    
T  29659276 ggttcgaacccgggtcacaatgttcggccttacaattttggcatttgccagttgagctaggacttctagaca 29659347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 42578223 - 42578180
Alignment:
Q  57 ccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  42578223 ccttgcaatttcggcatttgccagttgagctaggacttctagac 42578180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 16654444 - 16654360
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    ||||||| || ||||||||| |||||| |  |||| ||||||||||||||| |||||  |||||||| ||||||||||| |||||    
T  16654444 gtgaggttccgggttcgaactcggatcacggcgtccggccttgcaatttcggcatttatcagttgagttaggacttctaaacaat 16654360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 4800920 - 4800873
Alignment:
Q  56 gccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  4800920 gccttgcaatttcgacatttgccggttgagctagaacttctaaacaat 4800873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 25501860 - 25501907
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  25501860 acgtccggccttgcaatttcagcatttgccagttgagctaggacttct 25501907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 40786266 - 40786337
Alignment:
Q  29 aggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||| || || | ||||| ||||||||||||||| |||||| |||||||| || |||||||||||    
T  40786266 aggttcgaaccagggtcacgacgtccggccttgcaatttcggcatttgtcagttgagttatgacttctagac 40786337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 38440246 - 38440328
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||| |||||||| | |||| || | ||||| ||||||||||||||| |||||| |||||||||| | ||||||| |||||    
T  38440246 gaggtctcaggttcggatccgggtcacgacgtccggccttgcaatttcggcatttgtcagttgagctggaacttctaaacaat 38440328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 7349179 - 7349098
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||| | | ||||||| |||||| | ||||| ||||||||||| ||  ||||||||||||||| | ||||||||||||    
T  7349179 gtgaggtctcggattcgaactcggatcacgacgtccggccttgcaatatcagcatttgccagttgagattggacttctagac 7349098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 13106395 - 13106354
Alignment:
Q  61 gcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  13106395 gcaattttgacatttaccagttgagctaggacttctagacaa 13106354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 45201931 - 45202000
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||| |||||| | ||| | | |||| |||||||||||||||||| ||||| ||||||||||||||    
T  45201931 gttcgaactcggatcacgacgaccgaccttacaatttcgacatttgccaattgagttaggacttctagac 45202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 7275933 - 7276016
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacattt-gccagttgagctaggacttctagaca 101  Q
    |||||||||| |||||||||||||  | | || || | ||||||||||||| ||||| | |||||||| |||||||||||||||    
T  7275933 gtgaggtcccgggttcgaacccgggccacgacatccgaccttgcaatttcggcattttgtcagttgagttaggacttctagaca 7276016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 14308818 - 14308864
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||| ||||||||||| ||| ||||| ||||||||||||||||||    
T  14308818 ggccttacaatttcgacaattgtcagtttagctaggacttctagaca 14308864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 21840539 - 21840573
Alignment:
Q  62 caatttcgacatttgccagttgagctaggacttct 96  Q
    ||||||||||||||| |||||||||||||||||||    
T  21840539 caatttcgacatttgtcagttgagctaggacttct 21840573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 42025707 - 42025674
Alignment:
Q  63 aatttcgacatttgccagttgagctaggacttct 96  Q
    |||||||||||||| |||||||||||||||||||    
T  42025707 aatttcgacatttgtcagttgagctaggacttct 42025674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 43684114 - 43684073
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||||||||||||| |||||| |||||||| ||||||||||    
T  43684114 ggccttgcaatttcggcatttgtcagttgagataggacttct 43684073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 32844654 - 32844702
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    ||||| ||||||||||||||| |||||||||||||| |||  |||||||    
T  32844654 acgtccggccttgcaatttcggcatttgccagttgaactaaaacttcta 32844702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 28455955 - 28455874
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28455955 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 28455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 29994430 - 29994511
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||| | ||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29994430 gtgaggtctcgggttcgaacccggatcatgacgtctggccttgcaatttcggcatttgccagttgagctaggacttctagac 29994511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 41761458 - 41761541
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||  ||||||||||||| || ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  41761458 gtgaggtcctgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgaactaggacttctagacaa 41761541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 48660103 - 48660020
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||| |||| ||||||||||||| ||  |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48660103 gtgagatcccgggttcgaacccgggtcataacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaa 48660020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 39276431 - 39276357
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggact 93  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  39276431 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaatttcggcatttgccagttgagctaggact 39276357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 32007155 - 32007074
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  32007155 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 32007074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 29587333 - 29587255
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    |||||||||| ||||||||||| | || | ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  29587333 gtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttcta 29587255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 5055835 - 5055916
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| |||||||||| |||||||||||||||||||    
T  5055835 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagctgagctaggacttctagac 5055916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 41808283 - 41808202
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| || ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  41808283 gtgaggttccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 41808202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 45813058 - 45813140
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| || | | ||| | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  45813058 gtgaggtcccgggttcgaacccgggtcacgatgtccgaccttgcaatttcggcatttgtcagttgagctaggacttctagaca 45813140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 192496 - 192415
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||  ||||||||| |||||| ||||||| |||||||||||||   |||||| |||||||||||||||||||||||    
T  192496 gtgaggtcctgggttcgaacacggatcacaacgtccggccttgcaattttagcatttgtcagttgagctaggacttctagac 192415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 46447424 - 46447506
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| |  | |||||  |||||||||||||| |||||||||||||| |||| |||||||||||    
T  46447424 gtgaggtcccgggttcgaacccgggttacgacgtcgagccttgcaatttcggcatttgccagttgaactagaacttctagaca 46447506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 20829 - 20748
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||| |||| || |  ||||  |||||||||||||| ||||||||||||||| ||||||||||||||    
T  20829 gtgaggtcccgggttcgaatccgggtcacggcgtcctgccttgcaatttcggcatttgccagttgagttaggacttctagac 20748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 5943750 - 5943682
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    |||||||||||| || | ||||| ||||||||||||||| |||||| |||||||||||||| |||||||    
T  5943750 gttcgaacccgggtcacgacgtccggccttgcaatttcggcatttgtcagttgagctaggaattctaga 5943682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 35945878 - 35945798
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    ||||||| || ||||||||||| | || |||||||  ||||| |||||||| ||||| |||||||||||||||||||||||    
T  35945878 gtgaggttccgggttcgaacccaggtcacaacgtccagccttacaatttcggcatttaccagttgagctaggacttctaga 35945798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 50106243 - 50106325
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| || ||||||  ||||||||||| || |||||| |||||| |  |||||||||||||||    
T  50106243 gtgaggtcccgggttcgaacccgggtcacaacgttcggccttgcaatctcaacatttaccagttaaattaggacttctagaca 50106325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 2088964 - 2089033
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||  || | | ||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  2088964 gttcgaacccgagtcacgatgtctgaccttacaatttcgatatttgccagttgagctaggacttctagac 2089033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 11688331 - 11688263
Alignment:
Q  32 ttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||| || || ||||||  || ||||||||||||| ||||| |||||||||||||||||||||||    
T  11688331 ttcgaaccagggtcacaacgttcgggcttgcaatttcgatatttgtcagttgagctaggacttctagac 11688263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 45294700 - 45294656
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  45294700 cttgcaatttcggcatttgctagttgagctaggacttctagacaa 45294656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 4066039 - 4065960
Alignment:
Q  22 aggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| ||| |||||||||||||| ||||||   | ||||||||||||  ||||| ||||||||||||| ||||||||||    
T  4066039 aggtctcagattcgaacccggatcacaacgttcagtcttgcaatttcggtatttgtcagttgagctaggtcttctagaca 4065960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 49783788 - 49783705
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| || |||||||||||| |||   ||||  | ||||||||||||||||||||||| ||||| |||||||| |||||||    
T  49783788 gtgaggttccgggttcgaacccgaatcatgacgttcgaccttgcaatttcgacatttgccaattgagttaggacttatagacaa 49783705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 39284371 - 39284289
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||  ||||||||||||| ||| | ||||| | |||| ||||||| ||||| | ||||||||||| ||||||||||||    
T  39284371 gtgaggtcttaggttcgaacccgaatcacgacgtccgaccttacaatttcaacattcgtcagttgagctatgacttctagaca 39284289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 21938987 - 21938944
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctag 98  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||    
T  21938987 ggccttacaatttcggcatttaccagttgagctaggacttctag 21938944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 25931226 - 25931277
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| |||||||||||||| |||||| |||||||| ||||| ||||||||    
T  25931226 acgtctagccttgcaatttcggcatttgtcagttgagttaggatttctagac 25931277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 34121643 - 34121686
Alignment:
Q  59 ttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||    
T  34121643 ttgcaatttcgacatttgccagttgaattaggacttcaagacaa 34121686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7059548 - 7059491
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttg 76  Q
    |||||||| ||| ||||||||||| || | ||||||| ||||||||||| ||||||||    
T  7059548 gtgaggtctcagattcgaacccgggtcacgacgtctgaccttgcaattttgacatttg 7059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 7275733 - 7275680
Alignment:
Q  48 aacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||| | |||| |||||||||||||||||||||||| || || |||||||||    
T  7275733 aacgtccgaccttacaatttcgacatttgccagttgagttaagatttctagaca 7275680  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 32982432 - 32982480
Alignment:
Q  54 tggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| || ||||| |||||  |||||||||||||||||||||||||    
T  32982432 tggccttacagtttcggcatttatcagttgagctaggacttctagacaa 32982480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 44084021 - 44083939
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||    
T  44084021 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagaca 44083939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 40058319 - 40058238
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  40058319 gtgaggtcccgggttcgaacccgggtcacaacgtccggccttgcaattttggcatttgccagttgagttaggacttctagac 40058238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 2146706 - 2146634
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2146706 ggttcgaacccgggtcacaacgtccggccttgcaatttcggcattttccagttgagctaggacttctagacaa 2146634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 31770579 - 31770663
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaat 103  Q
    |||||||||| ||||||||||||| ||   || || ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31770579 gtgaggtcccgggttcgaacccgggtcatgacatccggccttgcaatttcggcatttgccagttgagctaggacttctagacaat 31770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 23358266 - 23358183
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| ||||||||||||| |  | ||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  23358266 gtgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggtatttgccagttgagctaggacttctagacaa 23358183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 47250304 - 47250378
Alignment:
Q  25 tcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    |||||||||||||||||| ||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  47250304 tcccaggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctaga 47250378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 4106819 - 4106738
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||    
T  4106819 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgggctaggacttctagac 4106738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 7162835 - 7162916
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||  |||||||||||| || ||||||| |||||| |||||||| |||||||||||||||||||||||| |||||    
T  7162835 gtgaggtcccgagttcgaacccgggtcacaacgtccggccttacaatttcggcatttgccagttgagctaggacttttagac 7162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 25546322 - 25546404
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| | ||||||||||| ||   ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||    
T  25546322 gtgaggtcccggattcgaacccgggtcatgacgtccggccttgcaatttcggcatttaccagttgagctaggacttctagaca 25546404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 42081671 - 42081743
Alignment:
Q  27 ccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    ||||||||||||||||||| ||||||  |  |||||||||| |||||||||||| ||||||||||||||||||    
T  42081671 ccaggttcgaacccggatcacaacgttcgatcttgcaattttgacatttgccagctgagctaggacttctaga 42081743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 25112294 - 25112377
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| ||||||||||| | ||   ||||| | |||||||||||||  |||||||||||||||||||||||||||||||    
T  25112294 gtgaggtcccgggttcgaacccaggtcatgacgtccgaccttgcaatttcggtatttgccagttgagctaggacttctagacaa 25112377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27229525 - 27229600
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggactt 94  Q
    |||||||||| ||||||||||| | || | ||||| |||||||||||||||||||||| |||||||| ||||||||    
T  27229525 gtgaggtcccgggttcgaacccaggtcacgacgtccggccttgcaatttcgacatttgtcagttgagttaggactt 27229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 40643044 - 40642973
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| ||||||||||| || |||||||||    
T  40643044 ggtttgaacccggatcacaatgtctggccttacaatttcgacatttgtcagttgagctaagatttctagaca 40642973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 4107390 - 4107324
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgag 85  Q
    |||||||||| ||||||||||||| |||  ||||| ||||||||||||||| |||||||||||||||    
T  4107390 gtgaggtcccgggttcgaacccgggtcgtgacgtccggccttgcaatttcggcatttgccagttgag 4107324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 29484802 - 29484876
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggact 93  Q
    |||||||||| ||||| ||||| ||||   ||||| ||||||||||||||| |||||||||||||||||||||||    
T  29484802 gtgaggtcccgggttcaaacccagatcatgacgtccggccttgcaatttcggcatttgccagttgagctaggact 29484876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 43753801 - 43753878
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||||| || ||||||||||| | || | ||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  43753801 gtgaggttccgggttcgaacccaggtcacgacgtccggccttgcaatttcggcatttgccagttgaactaggacttct 43753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 8439159 - 8439076
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||  |||||||| |||| || ||||||| | ||||||||||| | |||||||||||||| |||||||||||| ||||    
T  8439159 gtgaggtcctgggttcgaatccgggtcacaacgtccgaccttgcaattttggcatttgccagttgaactaggacttctaaacaa 8439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 34763497 - 34763454
Alignment:
Q  57 ccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  34763497 ccttgcaatttcgacattttccagttgagctaggacttctagac 34763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 29255787 - 29255717
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||| | |||||   ||||||||||| | ||||||||||||||||||| ||||||||||    
T  29255787 ggttcgaacccggatcacgacgtccaaccttgcaattttggcatttgccagttgagctagaacttctagac 29255717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 38033810 - 38033728
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    |||||||||| | || ||||||||||| ||| ||| | |||| |||||||| ||||||||||||||| ||| |||||||||||    
T  38033810 gtgaggtcccggatttgaacccggatcacaatgtccgaccttacaatttcggcatttgccagttgagttagaacttctagaca 38033728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5587361 - 5587291
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctag 89  Q
    |||||||||  |||||||||||||||| | | ||| || |||||||||||| |||||| ||||||||||||    
T  5587361 gtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcatttgtcagttgagctag 5587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 5592322 - 5592252
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctag 89  Q
    |||||||||  |||||||||||||||| | | ||| || |||||||||||| |||||| ||||||||||||    
T  5592322 gtgaggtcctgggttcgaacccggatcacgatgtccggacttgcaatttcggcatttgtcagttgagctag 5592252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 43203384 - 43203306
Alignment:
Q  22 aggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| ||||||||||||| || |  ||||  ||||| |||||||| |||||||||||| | |||||||||||||||    
T  43203384 aggtcccgggttcgaacccgggtcacggcgtcccgccttacaatttcggcatttgccagttcatctaggacttctagac 43203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 5772878 - 5772947
Alignment:
Q  31 gttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||| || ||  ||| | ||||||||||||| |||||||| ||||||||| |||||||||||    
T  5772878 gttcgaacccgggtcacattgtccgaccttgcaatttcggcatttgcccgttgagctaagacttctagac 5772947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 47961004 - 47961085
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||| ||||||||||||| ||   ||||||| ||||| ||||| | ||||||| ||||||| || |||||||||||||    
T  47961004 gaggtcccgggttcgaacccggttcatgacgtctgaccttgtaattttggcatttgcaagttgagttaagacttctagacaa 47961085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 28111017 - 28111061
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||||||||||| |||||||| || |||||||||||||    
T  28111017 cttgcaatttcgacatttgtcagttgagttaagacttctagacaa 28111061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 32606388 - 32606460
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| || || | ||||| |||||||||||||||  ||||| |||||||| ||| ||||||||||||    
T  32606388 ggttcgaacctgggtcacgacgtccggccttgcaatttcggtatttgtcagttgagttagaacttctagacaa 32606460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 43171016 - 43171068
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||| ||||||||||||||| |||||| |||||||| |||||||| ||||||    
T  43171016 acgtccggccttgcaatttcggcatttgtcagttgagttaggacttatagaca 43171068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 48146834 - 48146754
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctaga 99  Q
    |||||||||| ||||||||||||| || | || |||| ||||||||||||  |||||  |||||||||||| || ||||||    
T  48146834 gtgaggtcccgggttcgaacccgggtcacgacatctgaccttgcaatttctgcatttttcagttgagctagaacctctaga 48146754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 48444210 - 48444282
Alignment:
Q  30 ggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||||||| |||| | |||||  | ||| |||||||| |||||  |||||||||||||||||||||||||    
T  48444210 ggttcgaacccagatcacgacgtccagtcttacaatttcggcatttttcagttgagctaggacttctagacaa 48444282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 4001891 - 4001970
Alignment:
Q  21 gaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||  |||||||||||| || | || || ||||||||||||||||||||| |||||||  ||| ||| |||||||    
T  4001891 gaggtcccgagttcgaacccgggtcacgacatccggccttgcaatttcgacattttccagttgtactatgacatctagac 4001970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 25872834 - 25872763
Alignment:
Q  29 aggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||| ||||| | ||||| | ||||| ||| ||| ||||||||| ||||| ||||||||||||||    
T  25872834 aggttcgaacctggatcacgacgtccgaccttgtaatatcggcatttgccaattgagttaggacttctagac 25872763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 13887252 - 13887174
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttcta 97  Q
    ||||||| || |||||||||| || || | ||||| || ||||||| |||| ||||||||||||||| || ||||||||    
T  13887252 gtgaggttccgggttcgaacctgggtcacgacgtccggtcttgcaagttcggcatttgccagttgagttaagacttcta 13887174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 11355904 - 11355823
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| |||| |||||||| || ||||  |||||| | ||||||||||||| ||||||  |||||| |||| ||||||||||    
T  11355904 gtgagatcccgggttcgaatccagatcataacgtccgaccttgcaatttcggcatttgttagttgaactagaacttctagac 11355823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 47557862 - 47557781
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||| || ||||||||||||| ||   ||||  | ||||| ||||||| ||||| ||||||||| ||||||||||||||    
T  47557862 gtgaggttccgggttcgaacccgggtcatgacgtgcgaccttgtaatttcggcatttaccagttgagttaggacttctagac 47557781  T

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Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 27915666 - 27915710
Alignment:
Q  57 ccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||  ||||| ||||||||| |||||||||||||||    
T  27915666 ccttgcaatttcagcatttaccagttgagttaggacttctagaca 27915710  T

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Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 34708699 - 34708667
Alignment:
Q  73 tttgccagttgagctaggacttctagacaatat 105  Q
    ||||||||||||||||||||||||||| |||||    
T  34708699 tttgccagttgagctaggacttctagataatat 34708667  T

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Target: scaffold0032 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 56562 - 56481
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  56562 gtgaggtcccgggttcgaacccgggtcacaacgtccgaccttgcaatttcggcatttgccagttgagctaggacttctagac 56481  T

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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 33621575 - 33621492
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33621575 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagacaa 33621492  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 28323013 - 28322932
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||||||   ||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  28323013 gtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 28322932  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 33704297 - 33704216
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  33704297 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 33704216  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 4464208 - 4464127
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||||||||||||||   ||||| ||||||||||||||| |||||| ||||||| |||| ||||||||||    
T  4464208 gtgaggtcccaggttcgaacccggatcatgacgtccggccttgcaatttcggcatttgtcagttgaactagaacttctagac 4464127  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 11572089 - 11572008
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| || | |||||||||||| |||||||  ||||||  ||||||||||||||||||||||    
T  11572089 gtgaggtcccgggttcgaacccgggtcacgacgtctggccttacaatttctgcatttgttagttgagctaggacttctagac 11572008  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 21000773 - 21000692
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||| | ||   ||||  ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21000773 gtgaggtcccgggttcgaacccaggtcatgacgtacggccttgcaatttcggcatttgccagttgagctaggacttctagac 21000692  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 35218694 - 35218756
Alignment:
Q  38 cccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||| || ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  35218694 cccgggtcacaacgtccggccttgcaattttggcatttgccagttgagctaggacttctagac 35218756  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 21037359 - 21037291
Alignment:
Q  32 ttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||| ||||||||||    
T  21037359 ttcgaacccgagtcacaacgtccggccttgcaatttcagcatttgccagttgagctagaacttctagac 21037291  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 14939190 - 14939146
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  14939190 cttgcaatttcggcatttgccagttgagttaggacttctagacaa 14939146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 2959194 - 2959148
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||    
T  2959194 ggccttgcaatttcggcatttgctagttgagttaggacttctagaca 2959148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 10226540 - 10226620
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||| ||||||||||||  || | | |||  || ||| |||||||  |||||||||||||||||||||||||||||    
T  10226540 tgaggtcccgggttcgaacccgtgtcacgaagtccagctttgtaatttcggaatttgccagttgagctaggacttctagac 10226620  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 5598852 - 5598891
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagcta 88  Q
    ||||||||||||||||||| |||||||| |||||||||||    
T  5598852 acgtctggccttgcaattttgacatttgtcagttgagcta 5598891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 28592207 - 28592246
Alignment:
Q  63 aatttcgacatttgccagttgagctaggacttctagacaa 102  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  28592207 aatttcggcatttgccagttaagctaggacttctagacaa 28592246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 361056 - 361010
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagaca 101  Q
    ||||||||||||| | |||||||||| ||||||| ||||||||||||    
T  361056 ggccttgcaattttggcatttgccagatgagctaagacttctagaca 361010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 7487350 - 7487392
Alignment:
Q  58 cttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||| |||||||||||||||| ||||| |||||||||||||||    
T  7487350 cttgtaatttcgacatttgccggttgatctaggacttctagac 7487392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 4610872 - 4610952
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||||||||||| ||   | |||||||| |||||||||  ||||| | |||| |||||| ||||||||||    
T  4610872 gtgaggtcccaggttcgaacccgggtcatgatgtctggcc-tgcaatttcagcattttctagttaagctagaacttctagac 4610952  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 24619162 - 24619207
Alignment:
Q  55 ggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||| |||||| |||||||| |||||||| ||||||||||||||    
T  24619162 ggccttacaattttgacatttgtcagttgagttaggacttctagac 24619207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 33255569 - 33255489
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||||||||||||| | | ||  ||||||  ||||| |||||| | |||||||||| ||||||||||||| |||||    
T  33255569 gtgaggtcccaggttcgaactcaggtca-aacgtccagccttacaattttggcatttgccagctgagctaggacttatagac 33255489  T

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Target: scaffold1348 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 909 - 990
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||| ||   ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  909 gtgaggtcccgggttcgaacccgggtcatgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 990  T

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Target: scaffold0038 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 114333 - 114252
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| ||||||||||||||||   ||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  114333 gtgaggtcccgggttcgaacccggatcatgacgtccggccttacaatttcggcatttgccagttgagctaggacttctagac 114252  T

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Target: scaffold0044 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 10021 - 10101
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||| ||||||||||||| |  | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10021 tgaggtcccgggttcgaacccgggttacgacgtccggccttgcaatttcggcatttgccagttgagctaggacttctagac 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 14576 - 14495
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    |||||||||| |||||||||||||||| | ||||| |||||||||||||||||||||| ||| || |||||||||| |||||    
T  14576 gtgaggtcccgggttcgaacccggatcacgacgtccggccttgcaatttcgacatttgtcagctgtgctaggacttatagac 14495  T

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Target: scaffold0352 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 8990 - 9071
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||| ||||||||||||| |||  ||||||  ||||| |||||||| ||||| ||||||||||||| ||||||||||    
T  8990 gtgaggtcctaggttcgaacccgaatcataacgtcccgccttacaatttcggcatttaccagttgagctagaacttctagac 9071  T

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Target: scaffold0067 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 34869 - 34822
Alignment:
Q  49 acgtctggccttgcaatttcgacatttgccagttgagctaggacttct 96  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  34869 acgtccggccttgcaatttcggcatttgccagttgagctaggacttct 34822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 22244 - 22174
Alignment:
Q  19 gtgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctag 89  Q
    |||||||||| || |||||||||| || | ||||| |||||| |||||||| |||||| ||||||||||||    
T  22244 gtgaggtcccgggctcgaacccgggtcacgacgtccggccttacaatttcggcatttgtcagttgagctag 22174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 3259 - 3339
Alignment:
Q  20 tgaggtcccaggttcgaacccggatcgcaacgtctggccttgcaatttcgacatttgccagttgagctaggacttctagac 100  Q
    ||||||||| ||||||||||||  || | | |||  || ||| |||||||  |||||||||||||||||||||||||||||    
T  3259 tgaggtcccgggttcgaacccgtgtcacgaagtccagctttgtaatttcggaatttgccagttgagctaggacttctagac 3339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 856 - 818
Alignment:
Q  62 caatttcgacattt-gccagttgagctaggacttctaga 99  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  856 caatttcgacattttgccagttgagctaggacttctaga 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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