View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_129 (Length: 220)
Name: NF19192_high_129
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_129 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 36021510 - 36021724
Alignment:
| Q |
1 |
gaaaaaactaactatggagaatacacctatgaaaatctcgagagagagccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggtt |
100 |
Q |
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| T |
36021510 |
gaaaaaactaactatggagaatacacctatgagaatctcgagagagagccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggtt |
36021609 |
T |
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| Q |
101 |
ttatcgcgtcacacttagcacggcgtctcaagaaggagggacattacattattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctg |
200 |
Q |
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| T |
36021610 |
ttatcgcgtcacacttagcgcggcgtctcaagaaggagggacattacattattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctg |
36021709 |
T |
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| Q |
201 |
tgatgatgtccatct |
215 |
Q |
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|||||| ||||||| |
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| T |
36021710 |
tgatgaattccatct |
36021724 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 215
Target Start/End: Complemental strand, 47518449 - 47518274
Alignment:
| Q |
40 |
gagagagagccttactggccatcagaaaagcttaaaatttccatcactggtgctgggggttttatcgcgtcacacttagcacggcgtctcaagaaggagg |
139 |
Q |
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|||||||| || || |||||| |||||||||| | ||||||||| || |||||||| || ||||| || || ||| | || || ||||| |||| |||| |
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| T |
47518449 |
gagagagaaccatattggccaacagaaaagctaagaatttccattaccggtgctggtgggtttattgcctcccacattgctcgccgtcttaagaccgagg |
47518350 |
T |
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| Q |
140 |
gacattacattattgcttctgactggaagaaaaatgagcacatgactgaggacatgttctgtgatgatgtccatct |
215 |
Q |
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| T |
47518349 |
gccattacattattgcctctgattggaagaagaatgagcacatgactgaggacatgttctgtcatgagttccatct |
47518274 |
T |
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