View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_high_17 (Length: 566)
Name: NF19192_high_17
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_17 |
 | |
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| [»] scaffold0391 (2 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 530; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 33990118 - 33990667
Alignment:
| Q |
1 |
aatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990118 |
aatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaat |
33990217 |
T |
|
| Q |
101 |
gaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33990218 |
gaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
33990317 |
T |
|
| Q |
201 |
ttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990318 |
ttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaaca |
33990417 |
T |
|
| Q |
301 |
caaattcaatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990418 |
caaattcaatgaagctaaaccacctttcaagcgtcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaa |
33990517 |
T |
|
| Q |
401 |
atggagcttataagggatggttgctccacccttgtgttgactggcttaggaggattggggaaaaccactttggctacaaagctttgctgggatcaagaag |
500 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33990518 |
atggagcttataagggatggtagctccacccttgtgttgacgggcttaggaggattagggaaaaccactttggctacaaagctttgttgggatcaagaag |
33990617 |
T |
|
| Q |
501 |
ttaatggtaagtcataaatcctctttggctctctcatgcatgtttggatt |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33990618 |
ttaatggtaagtcataaatcctctttggctctctcatgcatgtttggatt |
33990667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 550
Target Start/End: Original strand, 33950654 - 33951183
Alignment:
| Q |
13 |
agcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggat |
112 |
Q |
| |
|
||||| |||| |||||||| |||||| || ||||||| |||||| ||||||||| ||| || || ||||| ||||||||||||||||| ||||||||| |
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| T |
33950654 |
agcacaaaagaaccaaagttcaaggcgatcattgaggttaatcttaaaggatttatctcccgttgtacaagatataaagcaatacaatgatcatttggat |
33950753 |
T |
|
| Q |
113 |
catcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg------ttgttg |
206 |
Q |
| |
|
|| |||||||||||||| || | ||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||| |
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|
| T |
33950754 |
caccccagagaagaaataaatagtctgatagaagaaaatgatgcaggagaaagtgcatgtacatgttcttctgagaatgattcctatggctatgttgttg |
33950853 |
T |
|
| Q |
207 |
atgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaaacttttgaacacaaatt |
306 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| || |
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| T |
33950854 |
aggagaaccaatctcttactgtaaatgatgttgaagagacgctttataagaccagagaaattcttgagcttctcaaccatgaa---------------tt |
33950938 |
T |
|
| Q |
307 |
caatgaagctaaaccacctttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggag |
406 |
Q |
| |
|
|||||||| | || || |||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33950939 |
caatgaagatggacaacttttcaagcgtcctttcaatgttcctgaaaatcaaaaattcactgttgggttggatataccatttagcaagttgaaaatggag |
33951038 |
T |
|
| Q |
407 |
cttataagggatggttgctccacccttgtgttgactggcttaggaggattggggaaaaccactttggctacaaagctttgctgggatcaagaagttaatg |
506 |
Q |
| |
|
||| | |||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |
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|
| T |
33951039 |
cttctgaggggtggtagctccacacttgtgttgactggtttaggaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagttaatg |
33951138 |
T |
|
| Q |
507 |
gtaagtcataaatcctctttggc-tctctcatgcatgtttggatt |
550 |
Q |
| |
|
|||||||||||||||| |||| | | ||||||||||||||||||| |
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| T |
33951139 |
gtaagtcataaatcctttttgccttatctcatgcatgtttggatt |
33951183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 59 - 283
Target Start/End: Original strand, 33959347 - 33959571
Alignment:
| Q |
59 |
aaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcag |
158 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || | |||| |||||||||||||||||| |
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|
| T |
33959347 |
aaggatttatctcctgtggttcaagacataaagcaatacaatgatcatttggatcaccccagagaggaaataaatagtctaatagaagaaaatgatgcag |
33959446 |
T |
|
| Q |
159 |
aagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggc |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
33959447 |
gagaaagtgcatgcaaatgttcttctgagaatgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagaaacactttataagcc |
33959546 |
T |
|
| Q |
259 |
cagagaaattcttgagcttctcaac |
283 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33959547 |
aagagaaattcttgagcttctcaac |
33959571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 350 - 550
Target Start/End: Original strand, 33973577 - 33973778
Alignment:
| Q |
350 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataagggatggttgctccacccttgtgttgactggcttag |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||| |||||||||||||| |||| |
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|
| T |
33973577 |
gaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttctgaggggtggtagctccacacttgtgttgactggtttag |
33973676 |
T |
|
| Q |
450 |
gaggattggggaaaaccactttggctacaaagctttgctgggatcaagaagttaatggtaagtcataaatcctctttggc-tctctcatgcatgtttgga |
548 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| | | ||||||||||||||||| |
|
|
| T |
33973677 |
gaggattggggaaaaccactctggctacaaagctttgttgggatgaagaagttaatggtaagtcataaatcctttttgccttatctcatgcatgtttgga |
33973776 |
T |
|
| Q |
549 |
tt |
550 |
Q |
| |
|
|| |
|
|
| T |
33973777 |
tt |
33973778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 33973306 - 33973573
Alignment:
| Q |
1 |
aatagttgaaacagcacgaaagcaccaaagtgcaaggcaattgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaat |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| |||||| |||| |||||| ||||||||| ||| || || ||||| |||||||| |||||| |
|
|
| T |
33973306 |
aatagttgaaacagcacgaaagaaccaaagttcaaggctattgtttaggttaatcttaaaggatttatctcccgttgtacaagatataaagcattacaat |
33973405 |
T |
|
| Q |
101 |
gaacatttggatcatcccagagaagaaatcaagactctattagaagaaaatgatgcagaagaaagtgcatgcaaatgttcttctgagaatgattcctatg |
200 |
Q |
| |
|
||||| |||||||| |||||||||||||| || | | | ||| |||||||||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
33973406 |
gaacacttggatcaacccagagaagaaataaatagttt-------------gat--agaagaaagtgcatgcaaatcttcttttgagaatgattcctacg |
33973490 |
T |
|
| Q |
201 |
ttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaac |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33973491 |
ttgttgatgagaaccaatctcttattgtaaatgatgtcgaagagacactttacaaggccagagaaattcttgagcttctcaac |
33973573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 517
Target Start/End: Original strand, 33911731 - 33911914
Alignment:
| Q |
334 |
tcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccatttagcaagttgaaaatggagcttataagggatggttgctccaccctt |
433 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||||| |||||| | ||| | ||| ||| ||||| ||| | ||||||||| | || || ||| |
|
|
| T |
33911731 |
tccttttggtgttcctgaaaatcctgaatttactgttggtttggattcgcaattgattaagccgaagatggaacttctcagggatggtagatctactctt |
33911830 |
T |
|
| Q |
434 |
gtgttgactggcttaggaggattggggaaaaccactttggctacaaagctttgctgggatcaagaagttaatggtaagtcataa |
517 |
Q |
| |
|
|||||||||| ||||| ||| |||| ||||||||||||||||||||||| || | ||||||| ||||||| |||||||||||| |
|
|
| T |
33911831 |
ttgttgactggtttaggtggaatgggaaaaaccactttggctacaaagctgtgtttggatcaacaagttaagggtaagtcataa |
33911914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 190 - 544
Target Start/End: Original strand, 10335 - 10693
Alignment:
| Q |
190 |
tgattcctatgttgttgatgagaaccaatctcttattgtaaatgatgttgaagagacactttataaggccagagaaattcttgagcttctcaactatgaa |
289 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |
|
|
| T |
10335 |
tgattcctatgtcgttgatgataaccaatctcttacggtaaatgatgttaaagagacactttacaaggccagagaaattcttgaacttcttaacaaggaa |
10434 |
T |
|
| Q |
290 |
acttttgaacacaaattcaatgaagctaaaccacct---ttcaagcatcctttcgatgttcctgaaaatccaaaattcactgttgggttggatataccat |
386 |
Q |
| |
|
| ||||||||| ||||| |||||| | |||||| |||||| |||||| | |||||| ||||||||| |||||| ||||||| | |||||||||| |
|
|
| T |
10435 |
aattttgaacagaaatttaatgaaaatggaccaccaatattcaagggtccttttggtgttccagaaaatccagaattcattgttgggattgatataccat |
10534 |
T |
|
| Q |
387 |
ttagcaagttgaaaatggagcttataagggatggttgctccacccttgtgttgactggcttaggaggattggggaaaaccactttggctacaaagctttg |
486 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| |||| ||||||||||||||||| || ||||| ||||| ||||||||| ||||||| || ||||| |
|
|
| T |
10535 |
ttagcaagttgaaaatggagctattgagagatggaagctcaacccttgtgttgactggtttgggagggttgggaaaaaccactctggctaccaatctttg |
10634 |
T |
|
| Q |
487 |
ctgggatcaagaagttaatggtaagtcat-aaatcctctttggctctctcatgcatgtt |
544 |
Q |
| |
|
|||||| || || | || ||||||| | ||||| ||||||| | ||||||||||||| |
|
|
| T |
10635 |
ttgggatgaacaaatcaagggtaagtggtaaaatcttctttggttttctcatgcatgtt |
10693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 42 - 162
Target Start/End: Original strand, 10163 - 10283
Alignment:
| Q |
42 |
tgttgaggtcaatcttgaaggatttaactcttgtggttcaagacataaagcaatacaatgaacatttggatcatcccagagaagaaatcaagactctatt |
141 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| | |||| || ||||| ||||||| | || ||| | |
|
|
| T |
10163 |
tgttgaggtcaaccttgaagggtttaactactgtggttcaagacataaagcaatacaatgaaaacatggaccaccccagcaaagaaataagcacactaat |
10262 |
T |
|
| Q |
142 |
agaagaaaatgatgcagaaga |
162 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
10263 |
agaagaaaatgttgcagaaga |
10283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 444 - 550
Target Start/End: Complemental strand, 8278922 - 8278816
Alignment:
| Q |
444 |
gcttaggaggattggggaaaaccactttggctacaaagctttgctgggatcaagaagttaatggtaagtcataaatcctctttggctctctcatgcatgt |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8278922 |
gcttaggaggattggggaaaaccactttggctacaaagctttgttgggatgaacaagttaagggtaagtgataaatcctctttggctctctcatgcatgt |
8278823 |
T |
|
| Q |
544 |
ttggatt |
550 |
Q |
| |
|
||||||| |
|
|
| T |
8278822 |
ttggatt |
8278816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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