View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_18 (Length: 565)
Name: NF19192_high_18
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 52712261 - 52712813
Alignment:
| Q |
1 |
atgtttattattttgtgaannnnnnncacaggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccg |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712261 |
atgtttattattttgtgaatttttttcacaggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccg |
52712360 |
T |
|
| Q |
101 |
tgccaggaagcaagtcaagctcaaatctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712361 |
tgccaggaagcaagtcaagctcaaatctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttg |
52712460 |
T |
|
| Q |
201 |
gagcagaccaatttgacgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttgg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712461 |
gagcagaccaatttgacgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttgg |
52712560 |
T |
|
| Q |
301 |
aatcacgatattggtttatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52712561 |
aatcacgatattggtttatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgcc |
52712660 |
T |
|
| Q |
401 |
ggtgttcggtattaccgtttccaaaaggcaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtct |
500 |
Q |
| |
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| T |
52712661 |
ggtgttcggtattaccgtttccaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtct |
52712760 |
T |
|
| Q |
501 |
ccgtagaaaatgagcctactctctacgaggttgagaccacacactctgatatt |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52712761 |
ccgtagaaaatgagcctactctctacgaggttgagaccacacactctgatatt |
52712813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 27 - 553
Target Start/End: Original strand, 52721108 - 52721634
Alignment:
| Q |
27 |
cacaggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccgtgccaggaagcaagtcaagctcaaat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| || ||||| ||| |||| |||||||||| ||||| |
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|
| T |
52721108 |
cacaggggatggttttgctgacaatgtcggcctctttcgacacactgcgcccgcagaaatgtctggcgaaaccatgcaaggaggcaagtcaaggccaaat |
52721207 |
T |
|
| Q |
127 |
ctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttggagcagaccaatttgacgagggagat |
226 |
Q |
| |
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||| |||||||||||||||||||| || ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52721208 |
ctccttcttgtacggtgcacttggccttattgctttgggtacaggaggaatcaagccttgtgtatcatcctttggagcagaccaatttgacgagggagat |
52721307 |
T |
|
| Q |
227 |
gaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtttatgcacaag |
326 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
52721308 |
gaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgatattggtttatgcacaag |
52721407 |
T |
|
| Q |
327 |
ataaactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||| ||||| |
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|
| T |
52721408 |
ataaactagggtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaa |
52721507 |
T |
|
| Q |
427 |
ggcaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctac |
526 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||| |
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|
| T |
52721508 |
gccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttccgtagaaaatgaacctactctctat |
52721607 |
T |
|
| Q |
527 |
gaggttgagaccacacactctgatatt |
553 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
52721608 |
gaggttgagaccacacactctgatatt |
52721634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 97 - 553
Target Start/End: Original strand, 52698538 - 52698994
Alignment:
| Q |
97 |
accgtgccaggaagcaagtcaagctcaaatctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcc |
196 |
Q |
| |
|
||||||| | |||||||| |||| |||| || ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| || || |
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|
| T |
52698538 |
accgtgcaaagaagcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctca |
52698637 |
T |
|
| Q |
197 |
tttggagcagaccaatttgacgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttc |
296 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||||||| |||| |
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|
| T |
52698638 |
tttggagctgatcaatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttc |
52698737 |
T |
|
| Q |
297 |
ttggaatcacgatattggtttatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagc |
396 |
Q |
| |
|
||||||| || ||||||||||| |||| | || |||||||| |||||||||||| | | ||||||||||||||| || ||||||| ||| | | || |
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|
| T |
52698738 |
ttggaattacactattggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggc |
52698837 |
T |
|
| Q |
397 |
tgccggtgttcggtattaccgtttccaaaaggcaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagagga |
496 |
Q |
| |
|
| ||| ||| |||||| ||||| ||||| ||||||||||||| || |||||||||||||||||||||||||| || | |||||||||| | ||||| |
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|
| T |
52698838 |
cgttggtattccgtattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggagga |
52698937 |
T |
|
| Q |
497 |
gtctccgtagaaaatgagcctactctctacgaggttgagaccacacactctgatatt |
553 |
Q |
| |
|
||||| ||||||||||| || ||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
52698938 |
gtctcagtagaaaatgaaactcctctctatgaggttgaaaccacatactctgatatt |
52698994 |
T |
|
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