View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_28 (Length: 467)
Name: NF19192_high_28
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 142 - 311
Target Start/End: Complemental strand, 7942884 - 7942715
Alignment:
| Q |
142 |
ggtgaaaaatcgtaatcaagaagcaatatgaaaaaggaaaagaaggtaactttctttgacccttttgctcactctagtgaaatatataagtcaaagtttc |
241 |
Q |
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| T |
7942884 |
ggtgaaaaatcgtaatcaagaagcaatatgaaaaaggaaaagaaggtaactttctttgacccttttgctcactctagtgaaatatataagtcaaagtttc |
7942785 |
T |
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| Q |
242 |
tgcgtctctatagtttcacacaatttttgaaatttgttagttgtttattggtattaatcaataatggtag |
311 |
Q |
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| T |
7942784 |
tgcgtctctatagtttcacacaatttttgaaatttgttagttatttattggtattaatcaataatggtag |
7942715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 7943007 - 7942919
Alignment:
| Q |
19 |
ccattcaatcatcgtatttcgttgtccctcaacactttttaaggttaaattttaaccttgttgtctttctggatcagactcagatcctg |
107 |
Q |
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| T |
7943007 |
ccattcaatcatcgtatttcgttgtccctcaacactttttaaagttaaattttaaccttgttgtctttctggatcagactcagatcctg |
7942919 |
T |
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