View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_32 (Length: 426)
Name: NF19192_high_32
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 3 - 396
Target Start/End: Complemental strand, 5056103 - 5055713
Alignment:
| Q |
3 |
atcacatgtatgcatagattgctcacacaagaactcatactagaccttgagattaataaagaacattttcaatcctaagaaggtatcaaatggagcacta |
102 |
Q |
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| T |
5056103 |
atcacatgtatgcatagattgctcacacaagaactcagactagaccttgagattaataaagaacattttcaatcctaagaaggtatcaaatggagcacta |
5056004 |
T |
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| Q |
103 |
tgacatccctgaagaaatacatgttgcatacttaatagaagaagaaatggaagaccccacttcagaaaggttcaacttcaccaccttaggcaatttctgg |
202 |
Q |
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| T |
5056003 |
tgacatccctgaagaaatacatgttgcatacttaatagaagaagaaatggaagaccccacttcagaaaggttcaactt---caccttaggcaatttctgg |
5055907 |
T |
|
| Q |
203 |
aggctgcaagtaatatcaagatacttattattaaaaccatggaagtttaaattgatgtcgtgggaaagtgcaacaactttcaaaccatttattcaagctg |
302 |
Q |
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| T |
5055906 |
aggctgcaagtaatatcaagatacttattattaaaaccatggaagtttaaattgatgtcgtgggaaagtgcaacaactttcaaaccatttattcaagctg |
5055807 |
T |
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| Q |
303 |
gaacaagtactcaaaagaatgcatttgggatctaaggtggaannnnnnnngggtttcttgatacatatcaaagggatcgaagtgtagaaaaata |
396 |
Q |
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| T |
5055806 |
gaacaagtactcaaaagaatgcatttgggatctaaggtggaattttttttgggtttcttgatacatatcaaggggatcgaagtgtagaaaaata |
5055713 |
T |
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