View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_35 (Length: 420)
Name: NF19192_high_35
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 12206345 - 12206703
Alignment:
| Q |
9 |
caaaggctttttggagaagttatacaaagatgtaagagtagattttccaagcgacaaacaattcacgtaacaagtcaaggaggtgttggtgaccatttgg |
108 |
Q |
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| T |
12206345 |
caaaagctttttggagaagttatacaaagatgtaagagtagattttccaagcgaccaacaattcacgtaacaagtcaaggaagtgttggtgaccatttgg |
12206444 |
T |
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| Q |
109 |
atgagctgnnnnnnnnccctcaatctgaataaacctcagattcgcaaggccagcgtattttgctatgtgaattagaacttttttggcttgtatataaata |
208 |
Q |
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| T |
12206445 |
atgagct-ttttttttccctcaatctgaataaacctcagattcgcaaggcgagcgtattttgctatgtgaattagaacttttttggcttgtatataaata |
12206543 |
T |
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| Q |
209 |
gaagtaaaaacatttcagaaaaaagattacattcctaaactaattttttagagagaaaaacagagagaagtttagttttaccattggagattatttggag |
308 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
12206544 |
gaagtaaaaacatttcagaaaaaagattacaatcctaaactaattttttagagagaaaaacaaagagaagtttagtttcaccattggagattatttggag |
12206643 |
T |
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| Q |
309 |
cttagattcaagtcatggatgcttctcttcatcatcttctcttttgaattagttatatat |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12206644 |
cttagattcaagtcatggatgcttctcttcatcatcttctcttttgaattaattatatat |
12206703 |
T |
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