View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_37 (Length: 405)
Name: NF19192_high_37
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 7710973 - 7711343
Alignment:
| Q |
16 |
ctccataaacatagcataaggtgaatcaagttaatataatctcattaaacaacttaatataagatgaacaaatatattacaaaccctnnnnnnnntgtta |
115 |
Q |
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| T |
7710973 |
ctccataaacatagcataaggtgaatcaagttaatataatctcattaaacaacttaatataagatgaacaaatatattacaaaccctaaaaaaa-tgtta |
7711071 |
T |
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| Q |
116 |
taataaattaagtttcttcaaaaaatattataaggtaaggaaacatacaaagccttaggaagagtttcctgagattgttgagcaaacaacaagcgatgag |
215 |
Q |
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| T |
7711072 |
taa---attaagtttcttcaaaa-atattataaggtaaggaaacatacaaagccttaggaagagtttcctgagattgttgagcaagcaacaagcgatgag |
7711167 |
T |
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| Q |
216 |
atccatttggaagggtttgtttccacttgaagaagcaagctaatccatagcctaaggtacctaaaccccacacaaagaagactaaattgatcaccttcaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7711168 |
atccatttggaagggtttgtttccacttgaagaagcaagctaatccatagcctaaggtacctaaaccccacacaaagaagactaaattgatcaccttcaa |
7711267 |
T |
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| Q |
316 |
aatgaactcaaaaaagggtttcttggcca-tttttgatttggctacaagtagagagaaaatgtgtattaaaattat |
390 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7711268 |
aatgaactcaaaaaagggtctcttggccattttttgatttggctacaagtagagagaaaatgtgtattaaaattat |
7711343 |
T |
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