View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_42 (Length: 386)

Name: NF19192_high_42
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_42
NF19192_high_42
[»] chr6 (1 HSPs)
chr6 (197-372)||(24998891-24999065)
[»] chr2 (1 HSPs)
chr2 (151-334)||(38979700-38979883)
[»] chr3 (2 HSPs)
chr3 (151-334)||(51423942-51424126)
chr3 (198-334)||(11685962-11686097)
[»] chr8 (2 HSPs)
chr8 (198-334)||(8211560-8211695)
chr8 (151-334)||(9289755-9289939)
[»] scaffold0442 (1 HSPs)
scaffold0442 (151-334)||(13036-13222)
[»] chr4 (3 HSPs)
chr4 (198-334)||(7055248-7055384)
chr4 (151-334)||(14463069-14463253)
chr4 (151-187)||(7055398-7055434)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 197 - 372
Target Start/End: Original strand, 24998891 - 24999065
Alignment:
Q  197 cccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatata 296  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  24998891 cccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtg-cttttttggttaatcctctatgtgcaacagttagagtatatata 24998989  T
Q  297 tgcaagttatgctttgaagagttcttatgttaattttannnnnnnaataatgacagtgttcttttatatccacagg 372  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  24998990 tgcaagttatgctttgaagagttcttatgttaattttatttttttaataatgacagtgttcttttatatccacagg 24999065  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 38979700 - 38979883
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgt 250  Q
    ||||||||||||| ||||||||||||||||||||||| |        ||||||||||||||||| ||||   |||||||||| |||||||||| ||||||    
T  38979700 atatagtagaagtagcttcatagatgttgtattttatagtgttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgt 38979799  T
Q  251 ggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 334  Q
    |         |||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  38979800 gtttttttttgttaatcctctaggtgcgacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 38979883  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 51423942 - 51424126
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 248  Q
    ||||||||||||| |||||||||||||| ||||||||  ||        ||||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  51423942 atatagtagaagtggcttcatagatgttttattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 51424041  T
Q  249 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 334  Q
    |||        ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  51424042 gtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 51424126  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 11685962 - 11686097
Alignment:
Q  198 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 297  Q
    ||||||||||||||||| ||||  | || |||||| ||||||||||||||||||        ||||||||||||| |||||| ||||||||||| |||||    
T  11685962 ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaagagttagagtatgtatat 11686060  T
Q  298 gcaagttatgctttgaagagttcttatgttaatttta 334  Q
    |||||||||||||||| || |||||||||||||||||    
T  11686061 gcaagttatgctttgatgatttcttatgttaatttta 11686097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 334
Target Start/End: Original strand, 8211560 - 8211695
Alignment:
Q  198 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 297  Q
    ||||||||||||||||| ||||    || |||||| ||||||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |    
T  8211560 ccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatct 8211658  T
Q  298 gcaagttatgctttgaagagttcttatgttaatttta 334  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8211659 gcaagttatgctttgatgagttcttatgttaatttta 8211695  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 334
Target Start/End: Original strand, 9289755 - 9289939
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 248  Q
    ||||||||||||| |||||||||||||| ||||||||  ||         |||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  9289755 atatagtagaagtggcttcatagatgttttattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 9289854  T
Q  249 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 334  Q
     ||        ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||    
T  9289855 atg-tttttttggttaatcctctaggtgcaacagttagagtttgtatctgcaagttatgctttgatgagttcttatgttaatttta 9289939  T

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Target: scaffold0442 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 334
Target Start/End: Complemental strand, 13222 - 13036
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc----ccttatatgcatttgaactccttaggaatgaattatattaccatcatga 246  Q
    ||||||||||||| ||||||||||||||||||||||| |            ||||||||||||||||| ||||  | || |||||| |||||||||| ||    
T  13222 atatagtagaagtggcttcatagatgttgtattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacga 13123  T
Q  247 atgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 334  Q
    |||||        | |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13122 atgtgttatttttg-ttaatcatctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 13036  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 334
Target Start/End: Complemental strand, 7055384 - 7055248
Alignment:
Q  198 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 297  Q
    ||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||         |||||||||||| ||||| ||||||| |||| ||| |    
T  7055384 ccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtgcagcagttagcgtatgtatct 7055285  T
Q  298 gcaagttatgctttgaagagttcttatgttaatttta 334  Q
     ||||||||||||||| ||||||||||||||||||||    
T  7055284 tcaagttatgctttgatgagttcttatgttaatttta 7055248  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 151 - 334
Target Start/End: Complemental strand, 14463253 - 14463069
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc-ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatg 249  Q
    ||||||||||||| ||||||||||||||||||||||| |         |||||||| |||||||| ||||  |||| |||||| |||||||||| |||||    
T  14463253 atatagtagaagtggcttcatagatgttgtattttatagtgtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatg 14463154  T
Q  250 tggnnnnnnng---gttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 334  Q
    ||            |||||||||||| ||||||||||||||   | ||| ||||||||||||||||| |||||||||||| |||||||    
T  14463153 tgttttttttttttgttaatcctctaggtgcaacagttaga---tgtatctgcaagttatgctttgatgagttcttatgtcaatttta 14463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 7055434 - 7055398
Alignment:
Q  151 atatagtagaagttgcttcatagatgttgtattttat 187  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7055434 atatagtagaactggcttcatagatgttgtattttat 7055398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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