View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_high_51 (Length: 363)
Name: NF19192_high_51
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_51 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 41211471 - 41211808
Alignment:
| Q |
9 |
gattattcttgtttgttgcatacttcacaacattgttattgacatgcaagatgaagtgaatgatgagttactatgtttctatcgtaataatcatgactca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211471 |
gattattcttgtttgttgcatacttcacaacattgttattgacatgcaagatgaagtgaatgatgagttactatgtttctatcgtaataatcatgactca |
41211570 |
T |
|
| Q |
109 |
ggttaccatcaacttgtttatgaaggtgttgatgagaagggagtggcactaagagaaagtttgtctcactacttgactggaaggttgcacacatgaattt |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41211571 |
ggttaccatcaacttgtttatgaaggttttgatgagaagggagtggcactaagagaaagtttgtctcactacttgactggaaggttgcacacat-aattt |
41211669 |
T |
|
| Q |
209 |
tttgtccatcattgctagcatttggtatagcttaaaaatttaagtggaattgaatcatgaaagattataagaaaacatagtatagtatgatatagttgct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41211670 |
tttgtccatcattgctagcatttggtatagcttaaaaatttaagtggaattgaatcatgaaagattataagaaaacatagtatagtatgatatagttgct |
41211769 |
T |
|
| Q |
309 |
cctctttgatttctagattgtaaataatttggatgatgc |
347 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41211770 |
cctctttgatttctagactgtaaataatttggatgatgc |
41211808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 41201422 - 41201608
Alignment:
| Q |
9 |
gattattcttgtttgttgcatacttcacaacattgttattgacatgcaagatgaagtgaatgatgagttactatgtttctatcgtaataatcatgactca |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||| || || | ||| |||| ||||||||||||||| |
|
|
| T |
41201422 |
gattattcttgtttgttgcttacttcacaacattgtcattgatatgcaagatgaagtgaaggatgaattgctctatttgtatcataataatcatgactct |
41201521 |
T |
|
| Q |
109 |
ggttaccatcaacttgtttatgaaggtgttgatgagaagggagtggcactaagagaaagtttgtctcactacttgactggaaggttg |
195 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41201522 |
gggtaccatcaacttatttgtgaaggtgttgatgagatgggagtggcactaagagaaagtttgtctcactacttgaatggaaggttg |
41201608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University