View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_54 (Length: 350)

Name: NF19192_high_54
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_54
NF19192_high_54
[»] chr5 (4 HSPs)
chr5 (4-336)||(28532433-28532765)
chr5 (143-198)||(29021558-29021613)
chr5 (142-195)||(28673512-28673565)
chr5 (240-285)||(41900804-41900849)
[»] chr6 (2 HSPs)
chr6 (87-279)||(6588466-6588655)
chr6 (89-200)||(6416827-6416938)
[»] chr3 (5 HSPs)
chr3 (89-200)||(13469859-13469970)
chr3 (78-200)||(51763574-51763696)
chr3 (239-272)||(514011-514044)
chr3 (150-195)||(513925-513970)
chr3 (243-279)||(51763736-51763772)
[»] chr1 (2 HSPs)
chr1 (78-189)||(19467621-19467732)
chr1 (239-279)||(19467779-19467819)
[»] chr4 (6 HSPs)
chr4 (89-189)||(21833493-21833593)
chr4 (240-279)||(1601186-1601225)
chr4 (239-282)||(53761152-53761195)
chr4 (101-190)||(532589-532681)
chr4 (238-272)||(21833639-21833673)
chr4 (102-200)||(53761012-53761110)
[»] chr7 (1 HSPs)
chr7 (95-189)||(10615459-10615553)
[»] chr8 (2 HSPs)
chr8 (142-195)||(18314876-18314929)
chr8 (239-279)||(18314970-18315010)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 336
Target Start/End: Complemental strand, 28532765 - 28532433
Alignment:
Q  4 cgacctcgacctcatacttaagtaccccttaaattatatctctatgatagagactcggactcgtagttataacaatgggatagaggctctctcactttca 103  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  28532765 cgacctcgacctcagactaaaataccccttaaattatatctctatgatagagactcgaactcgtagttataacaatggggtagaggctctctcactttca 28532666  T
Q  104 cttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532665 cttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 28532566  T
Q  204 ttgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattgatgtctttctcattatcatcgtattcaatatc 303  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  28532565 ttgatggttataagcaattattaaccgatgcaggcattgcttctgctctccgtgagagaccgacattgatgtctttctcgttatcatcgtattcaatatc 28532466  T
Q  304 acgtcctccattcatgacttcacatattattga 336  Q
    |||||||||||||||||||||||||||||||||    
T  28532465 acgtcctccattcatgacttcacatattattga 28532433  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 29021613 - 29021558
Alignment:
Q  143 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 198  Q
    |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  29021613 atcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagt 29021558  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 28673512 - 28673565
Alignment:
Q  142 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 195  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||||| ||||    
T  28673512 catcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaaga 28673565  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 41900804 - 41900849
Alignment:
Q  240 ttgcttctgctctccgtgagagaccaacattgatgtctttctcatt 285  Q
    ||||||||||||||||  ||||||||||||||| |||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcatt 41900849  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 87 - 279
Target Start/End: Original strand, 6588466 - 6588655
Alignment:
Q  87 aggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagct 186  Q
    |||||||||||||  ||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| ||||||||    
T  6588466 aggctctctcactcgcacttttcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagct 6588565  T
Q  187 tctccaagaagtcaacattgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattgatgtcttt 279  Q
    |||||| |||||||||||   ||||| |   |    ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||    
T  6588566 tctccaggaagtcaacatatttggttgt---cgtgaattaaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtcttt 6588655  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 6416938 - 6416827
Alignment:
Q  89 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 188  Q
    ||||| |||||| ||||| | ||||||||||| ||||||||||||   |||||  | ||||||||||| |||||||| || |||  ||||||||||||||    
T  6416938 gctctatcacttgcactttttaaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagcttc 6416839  T
Q  189 tccaagaagtca 200  Q
    || |||||||||    
T  6416838 tcgaagaagtca 6416827  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 13469859 - 13469970
Alignment:
Q  89 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 188  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||   ||||| || ||||||| ||||||||||||||| |||  ||||||||||||||    
T  13469859 gctctatcacttgcactttttaaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagcttc 13469958  T
Q  189 tccaagaagtca 200  Q
    || |||||||||    
T  13469959 tcgaagaagtca 13469970  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 51763574 - 51763696
Alignment:
Q  78 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 177  Q
    |||||||| | || || |||||| | ||| ||||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  ||||    
T  51763574 atgggatacaagcactttcacttgctcttttcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaa 51763673  T
Q  178 ctgtaagcttctccaagaagtca 200  Q
    |||||||||||||||||| ||||    
T  51763674 ctgtaagcttctccaagatgtca 51763696  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 514011 - 514044
Alignment:
Q  239 attgcttctgctctccgtgagagaccaacattga 272  Q
    ||||||||||||||||||||||||||||||||||    
T  514011 attgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 513925 - 513970
Alignment:
Q  150 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 195  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 513970  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 51763736 - 51763772
Alignment:
Q  243 cttctgctctccgtgagagaccaacattgatgtcttt 279  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtcttt 51763772  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 19467621 - 19467732
Alignment:
Q  78 atgggatagaggctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaa 177  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||| | | || ||||  |||| |||||||| | |||    
T  19467621 atggggtagaggctctttcacttgcacttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaa 19467720  T
Q  178 ctgtaagcttct 189  Q
     |||||||||||    
T  19467721 ttgtaagcttct 19467732  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 19467779 - 19467819
Alignment:
Q  239 attgcttctgctctccgtgagagaccaacattgatgtcttt 279  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  19467779 attgcttctgctatccgtgagagaccaacattgaggtcttt 19467819  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 21833493 - 21833593
Alignment:
Q  89 gctctctcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttc 188  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||||| | |  || ||||||||||    
T  21833493 gctctttcacttgcacttatcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttc 21833592  T
Q  189 t 189  Q
    |    
T  21833593 t 21833593  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 1601225 - 1601186
Alignment:
Q  240 ttgcttctgctctccgtgagagaccaacattgatgtcttt 279  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtcttt 1601186  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 53761152 - 53761195
Alignment:
Q  239 attgcttctgctctccgtgagagaccaacattgatgtctttctc 282  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtctttctc 53761195  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 532681 - 532589
Alignment:
Q  101 tcacttctcaaactccgcaaggttaatctttcttc-ctttcc--catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctc 190  Q
    |||||| |||||||||||||||||||||||||| | | |  |  ||||||| ||||||| ||||||||||||||||  || ||||||||||||    
T  532681 tcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 21833639 - 21833673
Alignment:
Q  238 cattgcttctgctctccgtgagagaccaacattga 272  Q
    ||||||||| |||||||||||||||||||||||||    
T  21833639 cattgcttcagctctccgtgagagaccaacattga 21833673  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 53761012 - 53761110
Alignment:
Q  102 cacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 200  Q
    ||||| |||||||||| |||||||||||||||  |||  |||| | | | |||||||||||||||||||| |  || ||||| ||||| ||||| ||||    
T  53761012 cacttttcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtca 53761110  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 10615553 - 10615459
Alignment:
Q  95 tcactttcacttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 189  Q
    |||||||||||| | ||||||||||||||||||||||||   |||| ||| ||||| ||||| ||| |||||||| ||  |||||||||||||||    
T  10615553 tcactttcactttttaaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttct 10615459  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 18314876 - 18314929
Alignment:
Q  142 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 195  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||    
T  18314876 catcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 18314970 - 18315010
Alignment:
Q  239 attgcttctgctctccgtgagagaccaacattgatgtcttt 279  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  18314970 attgcttttgctctccgtgagagaccaactttgaggtcttt 18315010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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