View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_55 (Length: 340)
Name: NF19192_high_55
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 11423298 - 11422966
Alignment:
| Q |
1 |
aattatcaaccaaattgagctttatttctaaagctctaatttttagctttaattgtaaattaattttttataacaaaataagtcagaccaaatgtagcct |
100 |
Q |
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| T |
11423298 |
aattatcaaacaactttagctttatttctaaagctctaatttttagctttaattttaaattaattttttataacaaaataagtcagaccaaatgtagcct |
11423199 |
T |
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| Q |
101 |
atgacccctttatttaactttcaaattcaataaatgcaggcagtcataatagaaggaaggacggtgaagatattaccataaagaaaacttgcaagacttc |
200 |
Q |
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| T |
11423198 |
aagacccctttatttaactttcaaattcaataaatgcaggcagtcataatagaaggaaggacggcgaagatattaccataaagaaaacttgcaagacttc |
11423099 |
T |
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| Q |
201 |
ccggtgaaatgtaatctgaaagaataagcttctcgtgctgcgtaggaccccaataataacctttcataccaacaacatttggatgcctgatgtttgcaaa |
300 |
Q |
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| T |
11423098 |
ccggtgaaatgtaatctgaaagaataagcttctcgtgctgcgtaggaccccaataataacctttcaaaccaacaacatttggatgcctgatgtttgcaaa |
11422999 |
T |
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| Q |
301 |
cttccttatctctttaacaaactctttcctttg |
333 |
Q |
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| T |
11422998 |
cttccttatctctttaacaaactctttcctttg |
11422966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 54181681 - 54181637
Alignment:
| Q |
1 |
aattatcaaccaaattgagctttatttctaaagctctaattttta |
45 |
Q |
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||||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
54181681 |
aattatcaaacaacttgagctttatttctaaagctcttattttta |
54181637 |
T |
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