View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_62 (Length: 322)
Name: NF19192_high_62
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_62 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 1300637 - 1300352
Alignment:
| Q |
18 |
atgaatgctttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaaca |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1300637 |
atgaatgatttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaaca |
1300538 |
T |
|
| Q |
118 |
atgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggagctggagatcttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1300537 |
atgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggagctggagattttgtt |
1300438 |
T |
|
| Q |
218 |
ggaaaagcttgtagtcaatactgccatagagaataaacccaaatcttctttttcaggatctcttttcaattgatatcttgattttgg |
304 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
1300437 |
ggaaaagcttgtagtcaatactggcattgagaataaacccaaatctt-ttttttaggatctcttttcaatggatatcttgattttgg |
1300352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 8658542 - 8658260
Alignment:
| Q |
18 |
atgaatgctttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaaca |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
8658542 |
atgaatgatttggattattgtgtttacaaagtgaagaatgcgttaaaaaagaaggatgttaatttaaacctctcccgtggagaaagggaaaagatcaaca |
8658443 |
T |
|
| Q |
118 |
atgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggagctggagatcttgtt |
217 |
Q |
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|||||| |||| | |||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
8658442 |
atgcaactaccttggcaacaaacttgcttcatgagaataacaa---acagcagaaaatagatgttgttgaggatcatctgaaggagctggaaatcatgtt |
8658346 |
T |
|
| Q |
218 |
ggaaaagcttgtagtcaatactgccatagagaataaacccaaatcttctttttcaggatctcttttcaattgatatcttgattttg |
303 |
Q |
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|
||||||||||||||||||||||| ||| |||||||| | |||||||||||||| ||||| |||||||||||||| |||| |||||| |
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| T |
8658345 |
ggaaaagcttgtagtcaatactggcattgagaataagcacaaatcttcttttttaggatatcttttcaattgatgtcttcattttg |
8658260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 8666586 - 8666489
Alignment:
| Q |
30 |
gattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattac |
127 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||||||||||||||||||||| | | |||||||| | |||||| | ||||||||||||||||||||| |
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| T |
8666586 |
gattcttgtgtttacaatatgaagaaggctttaaagaagaaggatgttaatctgattctctcccctcaagaaattgcaaagatcaacaatgcaattac |
8666489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 3146446 - 3146372
Alignment:
| Q |
18 |
atgaatgctttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcc |
92 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||| ||||| ||||||||||||||||| ||| ||||||||||| |
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| T |
3146446 |
atgaatgcattagattattgtgtttacaagatgaaaaatgctttaaagaagaaggatgtgaatataaatctctcc |
3146372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 8672070 - 8672167
Alignment:
| Q |
30 |
gattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattac |
127 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||| ||||||| |||||||| | | |||||||| | |||||| | ||||||||||||||||||||| |
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| T |
8672070 |
gattcttgtgtttacaatatgaagaacgctttagagaagaacaatgttaatctgattctctcccctcaagaaattgcaaagatcaacaatgcaattac |
8672167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 8646016 - 8645950
Alignment:
| Q |
61 |
taaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattac |
127 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||| |
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|
| T |
8646016 |
taaagaggaaggatgttaaattaaatctctcatctaaagaaaatgacaagatcaataatgcaattac |
8645950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 8653318 - 8653261
Alignment:
| Q |
68 |
gaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaatt |
125 |
Q |
| |
|
||||||||||||| ||| |||||| | ||||||| ||||||||||||||||||||| |
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| T |
8653318 |
gaaggatgttaatctaatcatctcccctcaagaaagtgaaaagatcaacaatgcaatt |
8653261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 4679540 - 4679787
Alignment:
| Q |
18 |
atgaatgctttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaaca |
117 |
Q |
| |
|
|||| ||| ||||| | |||||||||||| | |||||||| |||||||||||||||||||||||||| ||||| || | ||||| |||||||||||| |
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| T |
4679540 |
atgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaagctctcttgtgatgaaagtgaaaagatcaacg |
4679639 |
T |
|
| Q |
118 |
atgcaattaccgtcacaacaagcttgcttgataagaataacaacaaacagcagaaaatagatgttgttgaggatcatctcaaggagctggagatcttgtt |
217 |
Q |
| |
|
|||||||||| || | || | ||||||||||||||||||| | |||| | ||||||||||| ||||||||||||| |||||| |||||| | |||| |
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|
| T |
4679640 |
atgcaattacagtggccaccaacttgcttgataagaataacga---acagaaagaaatagatgttcttgaggatcatctgaaggagttggagagcatgtt |
4679736 |
T |
|
| Q |
218 |
ggaaaagcttgtagtcaatactgccatagagaataaacccaaatcttcttt |
268 |
Q |
| |
|
||||||||||| |||||| ||| || ||||| || | |||||||||||| |
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|
| T |
4679737 |
ggaaaagcttgaagtcaagactagcaatgagaaaaagcacaaatcttcttt |
4679787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 29465019 - 29464888
Alignment:
| Q |
30 |
gattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctc-tcccgtaaagaaagggaaaagatcaacaatgcaattacc |
128 |
Q |
| |
|
|||| |||||||||||| |||||||| | ||||||||||||| ||||||||| | ||| |||| | ||||||| || |||||||||||||||||||| |
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|
| T |
29465019 |
gattcttgtgtttacaatatgaagaatacattaaagaagaaggttgttaatttgatgctcttcccatcaagaaagtgagaagatcaacaatgcaattact |
29464920 |
T |
|
| Q |
129 |
gtcacaacaagcttgcttgataagaataacaa |
160 |
Q |
| |
|
||| | | |||||||||||||||||||| |
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|
| T |
29464919 |
gtctctgtgaatttgcttgataagaataacaa |
29464888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 16658509 - 16658648
Alignment:
| Q |
18 |
atgaatgctttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaaca |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| |||||||| |||||| | |||||| || |||||||||| |
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|
| T |
16658509 |
atgaatgcattggattattgtgtttacaatatgaagaatgctttaaagaaa---gatgtgaatttaaagctctcctctcaagaaattgagaagatcaaca |
16658605 |
T |
|
| Q |
118 |
atgcaattaccgtcacaacaagcttgcttgataagaataacaa |
160 |
Q |
| |
|
|||||||||| || | ||||| |||||||||||||||||||| |
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|
| T |
16658606 |
atgcaattactgtggccacaagtttgcttgataagaataacaa |
16658648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 9336892 - 9337022
Alignment:
| Q |
30 |
gattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaatctctcccgtaaagaaagggaaaagatcaacaatgcaattaccg |
129 |
Q |
| |
|
|||| |||||||||||| ||||||| || ||||||||||| |||||||| | | |||| | | | |||||| || |||||||||||||||||||| | |
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|
| T |
9336892 |
gattcttgtgtttacaatatgaagaacgctttaaagaagaacaatgttaatctgattctcacgcctcaagaaattgagaagatcaacaatgcaattactg |
9336991 |
T |
|
| Q |
130 |
tcacaacaagcttgcttgataagaataacaa |
160 |
Q |
| |
|
| | | | |||||||||||||||||||| |
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|
| T |
9336992 |
ttgctatgaatttgcttgataagaataacaa |
9337022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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