View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_70 (Length: 300)
Name: NF19192_high_70
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_70 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 14690856 - 14691034
Alignment:
| Q |
58 |
caagctaggttaaaaggtgaggaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaag |
157 |
Q |
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| T |
14690856 |
caagctaggttacaagctgaggaagatttgaagaagagtgaggaactgtgtgagagagctaaaatggcacagaataattatgaaaaatcgttgatggaaa |
14690955 |
T |
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| Q |
158 |
ttaagaaaaatagtttaggtgaaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttc |
236 |
Q |
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| T |
14690956 |
ttaagaaaaatagtttaggtgaaagagaaagcatcgttgagctaaaaatgaataataatgaattggagttggaagtttc |
14691034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 79 - 255
Target Start/End: Complemental strand, 41659533 - 41659357
Alignment:
| Q |
79 |
gaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaagttaagaaaaatagtttaggtg |
178 |
Q |
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| T |
41659533 |
gaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagggcacagagtaattatgaaacattgttggaggaagttaagaaaactagtttagttg |
41659434 |
T |
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| Q |
179 |
aaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaag |
255 |
Q |
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| T |
41659433 |
aaggagacatcattagagagctaagaaagaagaataatgaattggagttggaagtttgtgagctgagaaagttgaag |
41659357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 41708909 - 41708710
Alignment:
| Q |
76 |
gaggaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaagttaagaaaaatagtttag |
175 |
Q |
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| T |
41708909 |
gaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagttaagaaaacaaacttag |
41708810 |
T |
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| Q |
176 |
gtgaaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
275 |
Q |
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| T |
41708809 |
ctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatag |
41708710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 275
Target Start/End: Complemental strand, 41717981 - 41717782
Alignment:
| Q |
76 |
gaggaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaagttaagaaaaatagtttag |
175 |
Q |
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| T |
41717981 |
gaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaaagttattgaaggaagttaagaaaacaaacttag |
41717882 |
T |
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| Q |
176 |
gtgaaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
275 |
Q |
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| T |
41717881 |
ctgaaaaagacaccattggagagctaagaaagaagaacaatgaattggagttagaagtttgtgaactgagaaagttgaaggagaaatgggtgaatgatag |
41717782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 41686532 - 41686347
Alignment:
| Q |
75 |
tgaggaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaagttaag---aaaaatagt |
171 |
Q |
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| T |
41686532 |
tgaggaagatttgagaaaaagagaggaactttgtgaaagagggataagagcacaaaataattatgaaaaattgttgaaggaagttaaggaaaaaactagt |
41686433 |
T |
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| Q |
172 |
ttaggtgaaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaagga |
257 |
Q |
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| T |
41686432 |
ttgggtgatagagacatcattggagagctaagaaagaagaacagtgaattggagttagaagttcgtgagctgagaaagttgaagga |
41686347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 75 - 248
Target Start/End: Original strand, 14682425 - 14682598
Alignment:
| Q |
75 |
tgaggaagatttgaagaagagggaggaactctgtgagagaggtaaaatggcacaaaataattatgaaaagttgttgaaggaagttaagaaaaatagttta |
174 |
Q |
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| T |
14682425 |
tgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaaaattgttgaaggaagttaagaaaactacttca |
14682524 |
T |
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| Q |
175 |
ggtgaaagagaaagcattaatgagctgaaaaagaagaataatgaattggagttggaagtttcggagctgagaaa |
248 |
Q |
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| T |
14682525 |
gggtttagagaaacaatttctgagttagaaaagaagaacagtgatttggagttggaagtttctgagcttagaaa |
14682598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 41687944 - 41688003
Alignment:
| Q |
216 |
tgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgatag |
275 |
Q |
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| T |
41687944 |
tgaattggagttcgaagtttgtgagctgagaaagttgaatgaaaaatgggtcgatgatag |
41688003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 2439120 - 2439189
Alignment:
| Q |
204 |
aaagaagaataatgaattggagttggaagtttcggagctgagaaagttgaaggaaaaacgggttgatgat |
273 |
Q |
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| T |
2439120 |
aaagaagaacaataaattggagttggatgcttgtgagctgagaaagttggtggaaaaatgggtggatgat |
2439189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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