View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_72 (Length: 296)
Name: NF19192_high_72
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_72 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 101 - 296
Target Start/End: Original strand, 40555917 - 40556114
Alignment:
| Q |
101 |
agaaaaaataaaatcaactgatgtgatactcttagaagtggtannnnnnn--aagtgattttttctcnnnnnnnntatagcaaataacctcataaactat |
198 |
Q |
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| T |
40555917 |
agaaaaaataaaatcaactgatgtgatactcttagaagtggtatttttttttaagtgattttttctcaaaaaaaatatagcaaataacctcataaactat |
40556016 |
T |
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| Q |
199 |
tatgtcaaatgtccaaacaagcgctatattatgtatatagattgagaaaaacaaattaaataacattttttattaaatcaaatttgttaccaaaaaga |
296 |
Q |
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| T |
40556017 |
tatgtcaaatgtccaaacaagcgctgtattatgtatatagattgagaaaaacaaattaaataacattttttattaaatcaaatttgttaccaaaaaga |
40556114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 40555828 - 40555868
Alignment:
| Q |
12 |
aagaaacgaaaaaaggagaacagatgtgatactcttagaag |
52 |
Q |
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| T |
40555828 |
aagaaacgaaaaaaggagaacagatgtgatactcttagaag |
40555868 |
T |
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