View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_77 (Length: 279)

Name: NF19192_high_77
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_77
NF19192_high_77
[»] chr1 (30 HSPs)
chr1 (185-269)||(30368350-30368434)
chr1 (84-166)||(30368191-30368273)
chr1 (84-166)||(13007227-13007309)
chr1 (84-166)||(13070259-13070341)
chr1 (185-259)||(13094275-13094349)
chr1 (84-166)||(13101027-13101109)
chr1 (84-166)||(13204486-13204568)
chr1 (84-155)||(13094437-13094508)
chr1 (84-155)||(13129866-13129937)
chr1 (185-259)||(13070418-13070492)
chr1 (185-259)||(13129704-13129778)
chr1 (185-259)||(13161397-13161471)
chr1 (185-256)||(13244763-13244834)
chr1 (85-159)||(12963959-12964033)
chr1 (185-259)||(13100877-13100951)
chr1 (1-82)||(30367060-30367141)
chr1 (85-159)||(13080949-13081023)
chr1 (85-150)||(13065297-13065362)
chr1 (84-155)||(13161559-13161630)
chr1 (85-151)||(13244605-13244671)
chr1 (185-256)||(13085986-13086057)
chr1 (185-259)||(13204335-13204409)
chr1 (185-264)||(13271457-13271536)
chr1 (85-152)||(13271627-13271694)
chr1 (185-248)||(19279410-19279473)
chr1 (185-259)||(13007076-13007150)
chr1 (85-159)||(19279252-19279326)
chr1 (188-247)||(13010661-13010720)
chr1 (185-248)||(13081107-13081170)
chr1 (85-152)||(13086148-13086215)
[»] chr6 (4 HSPs)
chr6 (1-82)||(31376654-31376735)
chr6 (103-158)||(377572-377627)
chr6 (103-159)||(346874-346930)
chr6 (103-159)||(355533-355589)
[»] chr7 (1 HSPs)
chr7 (101-146)||(12164320-12164365)


Alignment Details
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 30368350 - 30368434
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccctagggcttct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30368350 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttct 30368434  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 30368191 - 30368273
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagaggaaacatta 166  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  30368191 tatgggaaggatggaaaaaatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagaggacacatta 30368273  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 13007309 - 13007227
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagaggaaacatta 166  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  13007309 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta 13007227  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 13070259 - 13070341
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagaggaaacatta 166  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  13070259 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacatta 13070341  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13094349 - 13094275
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13094349 tcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13094275  T

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Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 13101109 - 13101027
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagaggaaacatta 166  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  13101109 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacatta 13101027  T

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Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 13204568 - 13204486
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagaggaaacatta 166  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||    
T  13204568 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacatta 13204486  T

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Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 13094508 - 13094437
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagag 155  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  13094508 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagag 13094437  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 13129937 - 13129866
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagag 155  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  13129937 tatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagag 13129866  T

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Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 13070418 - 13070492
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13070418 tcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13070492  T

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Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13129778 - 13129704
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13129778 tcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaacccc 13129704  T

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Target: chr1; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13161471 - 13161397
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  13161471 tcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaacccc 13161397  T

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Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 13244763 - 13244834
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaac 256  Q
    ||||||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  13244763 tcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac 13244834  T

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Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 12963959 - 12964033
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagga 159  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||    
T  12963959 atgggaaggatggaacaaatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagagga 12964033  T

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Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13100951 - 13100877
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  13100951 tcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataacccc 13100877  T

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Target: chr1; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30367060 - 30367141
Alignment:
Q  1 gccaatagttggtatgctactgtcggtgttgcgtcatccatcaaatttcaacaaccatgtcaccttagttttgaaaggtcat 82  Q
    ||||||||||||||||||| ||||||||||||||||||  |||||||||||  ||||| ||||||||||||||||| |||||    
T  30367060 gccaatagttggtatgctattgtcggtgttgcgtcatctgtcaaatttcaatgaccatttcaccttagttttgaaatgtcat 30367141  T

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Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 13080949 - 13081023
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagga 159  Q
    |||||||| ||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||    
T  13080949 atgggaaggatggagcaaatatggggagaggattgcttggagtttaagcctgagagatggatatcagatagagga 13081023  T

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Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 13065297 - 13065362
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatca 150  Q
    |||||||| |||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13065297 atgggaaggatggagaaaatatggggagaagactgcatggaatttaagcctgagagatggatatca 13065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 155
Target Start/End: Complemental strand, 13161630 - 13161559
Alignment:
Q  84 tatgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagag 155  Q
    |||||| || ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||    
T  13161630 tatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatggatatctgagag 13161559  T

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Target: chr1; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 13244605 - 13244671
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcag 151  Q
    |||||||| ||| |||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  13244605 atgggaaggatgcaacaaatatggggagatgattgcttggaatttaagcctgaaagatggatatcag 13244671  T

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Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 13086057 - 13085986
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaac 256  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||| || |||||||||||  |||||||    
T  13086057 tcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaac 13085986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13204409 - 13204335
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| |||||||| ||||||  ||| ||||||||| || | |||||||||||||||||||||||    
T  13204409 tcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaacccc 13204335  T

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Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 13271536 - 13271457
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccctaggg 264  Q
    ||||||||| |||||||||||| |  | |||||||||||||||||||| ||||||||||||||  |||| || |||||||    
T  13271536 tcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtcagtctgttactcctaggg 13271457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 13271694 - 13271627
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcaga 152  Q
    |||||||||||||||||  ||||||| |  |||||| |||| ||||||||||||||||||||||||||    
T  13271694 atgggaagaatggaacatgtatggggtggtgattgcttggagtttaagcctgagagatggatatcaga 13271627  T

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Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 19279410 - 19279473
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcac 248  Q
    ||||||||| ||||||||||||||  | ||||||||||||| ||||||||| ||||||||||||    
T  19279410 tcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

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Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 13007150 - 13007076
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcaccctgtaacccc 259  Q
    ||||||||||||||| ||||| || ||||||   |||||||||||| ||||||||| |||||||||| |||||||    
T  13007150 tcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataacccc 13007076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 19279252 - 19279326
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagga 159  Q
    |||||||| ||||||||||||||||| || |||||| | ||||||  |||||||||||||||||| || ||||||    
T  19279252 atgggaaggatggaacaaatatggggtgatgattgcctagaatttcggcctgagagatggatatcggatagagga 19279326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 13010720 - 13010661
Alignment:
Q  188 aatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtca 247  Q
    |||||||||||| |||||||  ||||||||||| |||| |||||| ||||||||||||||    
T  13010720 aatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtca 13010661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 13081107 - 13081170
Alignment:
Q  185 tcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtggtggaaggtcac 248  Q
    ||||||||| ||||||||||||||  | ||||  ||||||||||| ||||||||||||||||||    
T  13081107 tcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac 13081170  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 13086215 - 13086148
Alignment:
Q  85 atgggaagaatggaacaaatatggggagaagattgcatggaatttaagcctgagagatggatatcaga 152  Q
    |||||||| ||| |||||||||||||  | ||| || | ||||||||||| |||||||||||||||||    
T  13086215 atgggaaggatgaaacaaatatggggtaaggatcgcttcgaatttaagcccgagagatggatatcaga 13086148  T

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Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31376735 - 31376654
Alignment:
Q  1 gccaatagttggtatgctactgtcggtgttgcgtcatccatcaaatttcaacaaccatgtcaccttagttttgaaaggtcat 82  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  31376735 gccaatagttggtatgctactgtcggtgttgcgtcatctgtcaaatttcaataaccatgtcaccttagttttgaaaggtcat 31376654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 377572 - 377627
Alignment:
Q  103 atatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagg 158  Q
    |||||||||||||||||| |||| || ||||| |||||||||||||| ||||||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagagg 377627  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 346930 - 346874
Alignment:
Q  103 atatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagga 159  Q
    ||||||||| |||||||  |||| || ||||| |||||||||||||| |||||||||    
T  346930 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagagga 346874  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 355589 - 355533
Alignment:
Q  103 atatggggagaagattgcatggaatttaagcctgagagatggatatcagagagagga 159  Q
    ||||||||| |||||||  |||| || ||||| |||||||||||||| |||||||||    
T  355589 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagagga 355533  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 12164365 - 12164320
Alignment:
Q  101 aaatatggggagaagattgcatggaatttaagcctgagagatggat 146  Q
    |||||||||||||||||||| ||||||||||||| ||||| |||||    
T  12164365 aaatatggggagaagattgcttggaatttaagccagagaggtggat 12164320  T

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