View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_80 (Length: 276)
Name: NF19192_high_80
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_80 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 40404348 - 40404215
Alignment:
| Q |
17 |
aggaaatgatgttgcctgtaaaaacaaacaagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgtgttgaa |
116 |
Q |
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| T |
40404348 |
aggaaatgatgttgcctgtaaaaacaaacaagaaatatccatcaccacttgttaacaaatgactacttttattattgtttactatagcatttgagttgaa |
40404249 |
T |
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| Q |
117 |
aataaaaatatgacatatcgccatgcaatatata |
150 |
Q |
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| T |
40404248 |
aataaaaatatgacatatcgccatgcaatatata |
40404215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 40404164 - 40404053
Alignment:
| Q |
148 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactcttagaagaatatttggacaacaaaagctaacgttaaattttaggta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
40404164 |
atatgttaatatgtttccaattaacatgctctataactaaataaatttttactctaagaagaatatttggacaacaaaagctaacgttaaatttgatgta |
40404065 |
T |
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| Q |
248 |
tatgatccaaca |
259 |
Q |
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| T |
40404064 |
tatgatccaaca |
40404053 |
T |
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