View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_83 (Length: 266)
Name: NF19192_high_83
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_83 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 2458574 - 2458317
Alignment:
| Q |
1 |
tacttcttcattaaaagtttcattgagaagaaatagaaatgcataacaccattttgtttgacaacaaggctaaatttgtccttatagtcga--------c |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
2458574 |
tacttcttcattaaaagtttcattgagaagaaatagaaatgcataacaccattttgtttgacaacaaggctaaattggtccttatagtcgataccagaac |
2458475 |
T |
|
| Q |
93 |
gttgatggaatcccttagcaactaatcgtgttgtgtaacacaaagtggagccatcagaattcctctttagacaaaaataataaataccacaatttttaaa |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
2458474 |
gttgatggaatcccttagcaactaatcgtgttgtgtaatacaaagtggagccatcagaattcctctttagacaaaaaaaataaataccataatttttaaa |
2458375 |
T |
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| Q |
193 |
acagatggcattaattagtttgaaagttatatgtgtgcgtctaaatatatacatatat |
250 |
Q |
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| ||||| |||||||||||||| |||||||||||||| ||||| ||||||| |||||| |
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| T |
2458374 |
atagatgacattaattagtttggaagttatatgtgtgtgtctatatatatatatatat |
2458317 |
T |
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