View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_9 (Length: 683)

Name: NF19192_high_9
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_9
NF19192_high_9
[»] chr3 (1 HSPs)
chr3 (1-664)||(4646443-4647103)
[»] chr7 (6 HSPs)
chr7 (1-658)||(8848909-8849563)
chr7 (171-599)||(24063559-24063984)
chr7 (200-262)||(19653033-19653095)
chr7 (396-565)||(19652730-19652899)
chr7 (51-118)||(19653174-19653241)
chr7 (200-259)||(30235652-30235711)
[»] chr6 (5 HSPs)
chr6 (3-577)||(34066076-34066647)
chr6 (198-464)||(20852664-20852930)
chr6 (38-439)||(28559412-28559810)
chr6 (396-565)||(14612621-14612790)
chr6 (200-262)||(14612924-14612986)
[»] chr2 (4 HSPs)
chr2 (198-538)||(27520587-27520927)
chr2 (190-262)||(21809698-21809770)
chr2 (366-538)||(21809874-21810046)
chr2 (372-520)||(19793829-19793977)
[»] chr4 (3 HSPs)
chr4 (51-555)||(19033860-19034361)
chr4 (190-262)||(16986185-16986257)
chr4 (366-439)||(16986008-16986081)
[»] chr5 (5 HSPs)
chr5 (372-565)||(26467559-26467752)
chr5 (198-310)||(23956714-23956826)
chr5 (192-283)||(26467379-26467470)
chr5 (38-258)||(30583827-30584044)
chr5 (472-538)||(23956487-23956553)
[»] chr8 (1 HSPs)
chr8 (171-262)||(15941161-15941252)
[»] scaffold0257 (3 HSPs)
scaffold0257 (200-262)||(13374-13436)
scaffold0257 (396-565)||(13071-13240)
scaffold0257 (51-118)||(13515-13582)


Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 664
Target Start/End: Original strand, 4646443 - 4647103
Alignment:
Q  1 atatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4646443 atatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgcca 4646542  T
Q  101 taaagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagt 200  Q
    ||||||||||||||||||||||| |||||||||||||    |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  4646543 taaagtagaagaaggaatggtcatgtttttattggtgg---aaacatgataaataaaagaattattgtgtaaaggaaaagcagaaaaatctaaaacaagt 4646639  T
Q  201 ctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcattgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4646640 ctatagagaccttcaaactgttcacccaaaccaatcatcttatgggagtcaagatcctgtaacaaacacttgttgtcatgaaaggtgacaaagcattgta 4646739  T
Q  301 aagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggtgcc 400  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  4646740 aagaatcacatagtttagaaatggaaattaagttgaagttgaatgaaggtgaatatagaacattgtcaaggtaaaaatgaggtgtaaagtgtatggtgcc 4646839  T
Q  401 aacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaatctgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  4646840 aacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaggagttgaaccaatttgaagaagaaacaatctgt 4646939  T
Q  501 tcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatggaagaagatatacctgattgtatagtggagatagaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4646940 tcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatggaagaagatatacctgattgtatagtggagatagaat 4647039  T
Q  601 tagaagcagggcaagtatgaacatgattgacactagtttgaggtgaagctacagatgaagcatg 664  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647040 tagaagcaggggaagtatgaacatgattgacactagtttgaggtgaagctacagatgaagcatg 4647103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 8849563 - 8848909
Alignment:
Q  1 atatatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgcca 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  8849563 atatatcacaggtggctttatgatcaaaagataatgaaggataaattttggacatatgagacagtctcttatgagaaacatgccctaacctaaaatgcca 8849464  T
Q  101 taaagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagt 200  Q
    ||||| |||||||||||||||||| ||||||||||||    ||| ||||| || | ||||||||||||  |||| ||||||||||||| |||||||||||    
T  8849463 taaagcagaagaaggaatggtcaaatttttattggtgg---aaatatgattaagagaagaattattgtgcaaagaaaaagcagaaaaatctaaaacaagt 8849367  T
Q  201 ctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcattgta 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  8849366 ctatagagaccttcaaactgttcacccaaaccaatcatcttctgggagtgaagatcctgtaacaaacacttgttgtcatgaaaggtgacaaagcatcgta 8849267  T
Q  301 aagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggtgcc 400  Q
    |||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| || ||    
T  8849266 aagaatcataaactttagaaatggaaattaagttgaagttgaatgaaggtgaatatagaacattgtcaaggtaaaagtgaggtgtaaagtgtattgttcc 8849167  T
Q  401 aacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaatctgt 500  Q
    | |||||||| |||||| |||||| | |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||     
T  8849166 agcatattcaactaaaacagatgagctattaggtaaattgacagatttaggtgaaattttgtgaaaagaggtgaaccaatgtgaagaagaaacaatgtgc 8849067  T
Q  501 tcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatggaagaagatatacctgattgtatagtggagatagaat 600  Q
    ||||| ||||||||||||||||| |||||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||| | ||||||||||||||    
T  8849066 tcattagcaccagaatctaacaaccatatatcggatttggaagatatagagcaagtaaaaatggaagaagatatacctgattgaacagtggagatagaat 8848967  T
Q  601 tagaagcagggcaagtatgaacatgattgacactagtttgaggtgaagctacagatga 658  Q
    | ||| ||||| ||||||||||||||||| |||||| | |||||||| ||||||||||    
T  8848966 ttgaaacaggggaagtatgaacatgattggcactagctggaggtgaaactacagatga 8848909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 171 - 599
Target Start/End: Original strand, 24063559 - 24063984
Alignment:
Q  171 aaaggaaaagcagaaaaacctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacact 270  Q
    |||||||||||||||||| |||| || | |||||||||||||||||  || |||||| || |||||||||| || |||| |||||| |||||| ||||||    
T  24063559 aaaggaaaagcagaaaaatctaacactaatctatagagaccttcaacttgatcaccctaatcaatcatcttctgagagtgaagatcatgtaacaaacact 24063658  T
Q  271 tgttgtcatgaaaggtgacaaagcattgtaaagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaag 370  Q
    |  |||||||||| |||||||| ||||| || ||  | |||| ||| || || ||||  ||  | | ||||||||||||||||||||||| |||||||||    
T  24063659 taatgtcatgaaaagtgacaaaacattgcaaggatgcgcataattttgagattgaaaccaatttaaggttgaatgaaggtgaatatagaacattgtcaag 24063758  T
Q  371 gtaaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagag 470  Q
    |||||| |||| ||| || || || |||||| |||||||| |||||| |||||||||||||||||  || | ||| || |||| |||||| ||||| ||     
T  24063759 gtaaaagtgagatgtgaagtgaattgtgccagcatattcaactaaaacagatgaaccattaggtaggttaacaggcttcggtgcaattttatgaaatgaa 24063858  T
Q  471 ttgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatggaagaag 570  Q
     | |||||||||| |||||| || || || ||||| |||| | |||| || || || |||||||| |||||||| ||  | |||| ||| ||   |||||    
T  24063859 gtaaaccaatgtggagaagacacgatgtgctcattagcactaaaatccaaaaaccaaatatcagactttgaagaaataaagcaagaaaagat---agaag 24063955  T
Q  571 atatacctgattgtatagtggagatagaa 599  Q
    |||||||||| || || ||||| ||||||    
T  24063956 atatacctgaatggatggtggaaatagaa 24063984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 19653095 - 19653033
Alignment:
Q  200 tctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    |||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||    
T  19653095 tctataaagaccttcaaattgatcacccaaaccaatcatcttctgggagtgaagatcctgtaa 19653033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 565
Target Start/End: Complemental strand, 19652899 - 19652730
Alignment:
Q  396 gtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaa 495  Q
    |||||| |||||| | |||| | ||| | ||||||||| ||||| | |||||||||  ||||||||||| | ||  ||||||| ||||  || |||||||    
T  19652899 gtgccagcatattgaactaacacagaagtaccattaggcaaatttacaggtttaggcaaaattttgtgataggaagtgaaccagtgtgtggaggaaacaa 19652800  T
Q  496 tctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatgga 565  Q
    | |||||||| || || || ||||| |  || ||||||||||| || || ||||||||||  ||||||||    
T  19652799 tatgttcattagctcctgagtctaaaagccaaatatcagatttagaggaaatggaacaagagaatatgga 19652730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 19653241 - 19653174
Alignment:
Q  51 gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaat 118  Q
    ||||||||||| | |||||||||||| ||||| | |||  | ||||||||||||| ||||||||||||    
T  19653241 gacatatgagacaatctcttatgagagacatgacctaatctgaagtgccataaagcagaagaaggaat 19653174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 30235652 - 30235711
Alignment:
Q  200 tctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctg 259  Q
    |||||||||||||||| | || ||| |||||||||||||||| ||||| | |||||||||    
T  30235652 tctatagagaccttcatattgatcatccaaaccaatcatcttctgggattgaagatcctg 30235711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 3 - 577
Target Start/End: Complemental strand, 34066647 - 34066076
Alignment:
Q  3 atatcacaagtggcttgatgatcaaaagataatgaaggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgccata 102  Q
    |||||||| |||||||  |||||||| | ||||| ||| |||||  | ||||||||||| ||||| |||||||||||||| |  ||  |||| |||||||    
T  34066647 atatcacatgtggctttgtgatcaaaggttaatgcagggtaaagagtagacatatgagacagtcttttatgagaaacatgtcccaatctaaaatgccata 34066548  T
Q  103 aagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagtct 202  Q
    ||| ||||||||||||||| ||| ||||||| |||    |||| |||| |||  || || |||||| ||||| ||||||||   || ||||||| | |||    
T  34066547 aagcagaagaaggaatggttaaggttttatttgtgg---aaacgtgattaactgaaaaactattgtgtaaagaaaaagcagttgaatctaaaactaatct 34066451  T
Q  203 atagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcattgtaaa 302  Q
    ||| |||||  ||||  |||||||||||||||||||||| ||||| |  || ||||||||  |||||||||| | |||||| ||| || | || |  | |    
T  34066450 atatagaccagcaaaaggttcacccaaaccaatcatcttctgggaatggaggtcctgtaataaacacttgttattatgaaaagtggcataacaattgaga 34066351  T
Q  303 gaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggtgccaa 402  Q
    ||    || || ||||| |||||||| | | |||||||||||||||||||| | | || ||||||||| |||| |||||||||||| ||||| || |||     
T  34066350 gaggagcaaagcttagatatggaaatcaggttgaagttgaatgaaggtgaaaacaaaacattgtcaagataaagatgaggtgtaaagtgtatagtaccag 34066251  T
Q  403 catattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaatctgttc 502  Q
    |||||||| |||||| | | ||||||||||||||||| | |||||| |||| |||||||||||| ||| |||||||||||||||| || || || |||||    
T  34066250 catattcaactaaaacataagaaccattaggtaaattaacaggttttggtgcaattttgtgaaatgaggtgaaccaatgtgaagatgacactatatgttc 34066151  T
Q  503 atttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatggaagaagatatacc 577  Q
    ||| |||||||| |||| ||| || |||||| |||| || ||||| ||||| | ||| ||||||| |||||||||    
T  34066150 attagcaccagagtctagcaaccaaatatcaaatttagatgatatagaacatgaaaaaatggaagcagatatacc 34066076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 198 - 464
Target Start/End: Original strand, 20852664 - 20852930
Alignment:
Q  198 agtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcatt 297  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||  |||| || |  | |||||| |||  |||||||     
T  20852664 agtctatagagaccttcaaattgttcacccaaaccaatcatcttatgggattgaagatcctgtaagaaacatttatcattatgaaatgtggtaaagcatc 20852763  T
Q  298 gtaaagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggt 397  Q
     |||||| ||||| || ||  |||| || || ||| | |   ||| | ||| |||||| |  | ||| ||||| ||||||||| | ||||| || |||||    
T  20852764 ttaaagagtcacaaagcttgaaaatagagatcaagtttagagtgactaaagatgaatacaagacattctcaagataaaaatgaagagtaaagtgaatggt 20852863  T
Q  398 gccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtga 464  Q
     ||| || ||||| |||||||||| ||||||||||||||||| | || |||||| ||||||||||||    
T  20852864 accatcaaattcaactaaaatagaggaaccattaggtaaattaacagatttaggggaaattttgtga 20852930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 38 - 439
Target Start/End: Complemental strand, 28559810 - 28559412
Alignment:
Q  38 aggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaatggtcaagtttttattggtg 137  Q
    |||||||| ||  ||||||||||| | |||||||||||| ||||| | |||| | ||||| ||||| | ||||||| ||||||| || ||| ||||||||    
T  28559810 aggataaatttgagacatatgagataatctcttatgagatacatgacctaacctgaagtgtcataatgcagaagaaagaatggttaaatttgtattggtg 28559711  T
Q  138 atgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatca 237  Q
        |||||||||  |||    |||||||| ||||||||| |  | |  || ||||| | | |||||| ||||||| || ||| || |||||||||||||    
T  28559710 g---aaacatgattgacagggaaattattgcataaaggaagattaaaggaatctaaagctaatctataaagacctttaatctgatctcccaaaccaatca 28559614  T
Q  238 tcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcattgtaaagaatcacatagtttagaaatggaaattaagctgaa 337  Q
    |||| ||||||| |||||| |||||  |||| || || |||||||| ||| ||   || |||||||||| ||| || || ||||| ||||| ||| | ||    
T  28559613 tcttctgggagtgaagatcttgtaagaaacatttattatcatgaaaagtggcatgacaatgtaaagaatgacaaagcttggaaatagaaatcaagttcaa 28559514  T
Q  338 gttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaa 437  Q
     |||||| | || ||||| | || ||||||||||| ||  ||||||| |||||| ||||| |||||||||| | | | || ||| | |||||||||||||    
T  28559513 attgaataatggagaatacataacattgtcaaggtgaatttgaggtgaaaattgaatggtaccaacatattgaacaataacagaagtaccattaggtaaa 28559414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 565
Target Start/End: Complemental strand, 14612790 - 14612621
Alignment:
Q  396 gtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaa 495  Q
    |||||| |||||| | |||| | ||| | ||||||||| ||||| | |||||||||  ||||||||||| ||||  ||||||| ||||  || |||||||    
T  14612790 gtgccagcatattgaactaacacagaggtaccattaggcaaattcacaggtttaggcaaaattttgtgataagaagtgaaccagtgtgtggaggaaacaa 14612691  T
Q  496 tctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatgga 565  Q
    | |||||||| || || |||||||| |  || ||||||||||| || || ||||||||||  ||||||||    
T  14612690 tgtgttcattggctcctgaatctaaaagccaaatatcagatttagaggaaatggaacaagagaatatgga 14612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 14612986 - 14612924
Alignment:
Q  200 tctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    |||||| ||||||||||| || |||||||||||||||||||| ||||| | ||||||||||||    
T  14612986 tctataaagaccttcaaattgatcacccaaaccaatcatcttctgggaatgaagatcctgtaa 14612924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 198 - 538
Target Start/End: Original strand, 27520587 - 27520927
Alignment:
Q  198 agtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcatt 297  Q
    |||||||||||||||||||| || ||||| |||| ||||||||| ||||| | ||||||||||||  ||||||||   | |||||| |||  ||| ||||    
T  27520587 agtctatagagaccttcaaattgatcaccaaaactaatcatcttctgggattgaagatcctgtaagaaacacttggaattatgaaatgtggtaaaacatt 27520686  T
Q  298 gtaaagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggtgaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggt 397  Q
     |||||||||||| || ||  |||| || |||||| | ||   |||||| |||||||||| || ||  ||||| ||||| ||||  ||||| || |||||    
T  27520687 ttaaagaatcacaaagcttgaaaatagagattaagttcaaagagaatgatggtgaatataaaacatcctcaagataaaattgagaagtaaaatgaatggt 27520786  T
Q  398 gccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaatc 497  Q
     ||| ||   ||| | | || ||| ||||||||||||||||| |  |||||||| | |||||| ||| | ||  ||||||||||| | ||||||||||      
T  27520787 accagcaatatcaacaagaacagaggaaccattaggtaaattaactggtttaggaggaattttatgatatgaagtgaaccaatgtaatgaagaaacaaca 27520886  T
Q  498 tgttcatttgcaccagaatctaacaatcatatatcagattt 538  Q
    |||||||| |||||||| ||||| |  || |||||||||||    
T  27520887 tgttcattagcaccagagtctaaaagccagatatcagattt 27520927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 21809698 - 21809770
Alignment:
Q  190 ctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    ||||||| | ||||||||||||| |||| |||||||||||||||||||||||  |||||| ||| ||||||||    
T  21809698 ctaaaactaatctatagagacctccaaattgttcacccaaaccaatcatcttccgggagtgaaggtcctgtaa 21809770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 538
Target Start/End: Original strand, 21809874 - 21810046
Alignment:
Q  366 tcaaggtaaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaa 465  Q
    ||||| ||||| ||||||||||| || || |||||| |||||||| | |||| ||| ||||||||||||||||| | |||| ||||    ||||||||||    
T  21809874 tcaagataaaattgaggtgtaaaatggatagtgccagcatattcaaccaaaacagaggaaccattaggtaaattaacaggtctaggattgattttgtgaa 21809973  T
Q  466 aagagttgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaacaatcatatatcagattt 538  Q
    | ||  |||||||||| | |  |  |||||| || ||||| |||||||| ||||| || || | |||||||||    
T  21809974 atgaagtgaaccaatgagtattattaacaatatgctcattagcaccagagtctaaaaaccagacatcagattt 21810046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 520
Target Start/End: Complemental strand, 19793977 - 19793829
Alignment:
Q  372 taaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagt 471  Q
    |||||||||||||| || || || |||||| |||| ||| |||| | ||||| ||||||||| ||||| | |||||||||    ||||||||||| ||      
T  19793977 taaaaatgaggtgtgaagtgaattgtgccagcatactcaactaacacagatgtaccattaggcaaattaacaggtttagggttgattttgtgaaaggaag 19793878  T
Q  472 tgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaa 520  Q
    | |||||||| | |  ||| ||||| || ||||| |||||| |||||||    
T  19793877 taaaccaatgagtactagatacaatgtgctcattagcaccataatctaa 19793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 51 - 555
Target Start/End: Complemental strand, 19034361 - 19033860
Alignment:
Q  51 gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaatggtcaagtttttattggtgatgaaaacatgat 150  Q
    ||||||| ||| ||| |||||||||| ||||| | |||| | ||||||||||||| ||||||||||||||| || ||| ||||||    | ||||| |||    
T  19034361 gacatataagaaagtgtcttatgagatacatgacctaacctgaagtgccataaagcagaagaaggaatggttaaatttgtattgg---aggaaacacgat 19034265  T
Q  151 aaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtc 250  Q
     |||| || ||| |||| ||||||||| |  | |  || ||||| | | |||||| |||||||||| ||| ||||||||| |||||||||| | |||||     
T  19034264 taacagaaaaatcattgcataaaggaagattaaaggaatctaaagctaatctatatagaccttcaatctgatcacccaaatcaatcatcttctaggagtg 19034165  T
Q  251 aagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcattgtaaagaatcacatagtttagaaatggaaattaagctgaagttgaatgaaggt 350  Q
    |||||| |||||  |||| || || ||| ||||  || ||    | |  ||||  | ||| ||||| |||||  |||| ||| | ||||||||| |||||    
T  19034164 aagatcatgtaagaaacatttattatcacgaaaaatggcatgaaaattcaaagtctgacaaagtttggaaatataaatcaagtttaagttgaataaaggt 19034065  T
Q  351 gaatatagaaaattgtcaaggtaaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttag 450  Q
    ||||| | || ||||||||||| ||| ||||||| ||| || ||||| |||||||||| |   |  || || | ||||||||||||||| | | | ||||    
T  19034064 gaatacaaaacattgtcaaggtgaaattgaggtgaaaaatgaatggtaccaacatattaaaaaagtattgaagtaccattaggtaaatttacaagcttag 19033965  T
Q  451 gtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatgga 550  Q
    |   |||||| | | ||||  ||||||||||||  || |||||||| |||||||| || || |||||||  |  |||||||||||||| ||||| || ||    
T  19033964 gattaattttattataagaagtgaaccaatgtgcggatgaaacaatgtgttcattggctcctgaatctagaagccatatatcagatttagaagaaataga 19033865  T
Q  551 acaag 555  Q
    |||||    
T  19033864 acaag 19033860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 16986257 - 16986185
Alignment:
Q  190 ctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    ||||||| | ||||||||||||| |||| ||||||||||||||||||||||| || |||| ||| ||||||||    
T  16986257 ctaaaactaatctatagagacctccaaattgttcacccaaaccaatcatcttctgcgagtgaaggtcctgtaa 16986185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 16986081 - 16986008
Alignment:
Q  366 tcaaggtaaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaatt 439  Q
    ||||| ||||| |||||||||||  | || |||||| |||||||| |||||| ||| |||||||||||||||||    
T  16986081 tcaagataaaattgaggtgtaaaacggatagtgccagcatattcaactaaaacagaggaaccattaggtaaatt 16986008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 372 - 565
Target Start/End: Original strand, 26467559 - 26467752
Alignment:
Q  372 taaaaatgaggtgtaaattgtatggtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagt 471  Q
    |||||||||||||| || || || |||||| |||||||| |||| | ||||| ||||||||| ||||| | |||||||||    ||||||||||||||      
T  26467559 taaaaatgaggtgtgaagtgaattgtgccagcatattcaactaacacagatgtaccattaggcaaattaacaggtttagggttgattttgtgaaaagaag 26467658  T
Q  472 tgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatgga 565  Q
    | |||||||| | |  ||| ||||| || ||||| |||||||||||||| || || | ||||||||| |||||||| || |||| ||| |||||    
T  26467659 taaaccaatgcgtactagagacaatgtgctcattagcaccagaatctaaaaaccaaacatcagatttagaagatatagagcaagaaaaaatgga 26467752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 23956826 - 23956714
Alignment:
Q  198 agtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaaggtgacaaagcatt 297  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||| | ||||||||||||  ||||||||   | |||||| |||  ||| ||||    
T  23956826 agtctatagagaccttcaaattgatcacccaaaccaatcatcttctgggattgaagatcctgtaagaaacacttggaattatgaaatgtggtaaaacatt 23956727  T
Q  298 gtaaagaatcaca 310  Q
     ||||||||||||    
T  23956726 ttaaagaatcaca 23956714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 26467379 - 26467470
Alignment:
Q  192 aaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaactaacacttgttgtcatgaaa 283  Q
    ||||| |||||||| ||||||  ||  ||||||||||||||||||||||| ||||||| ||| ||||||||  ||||||| |||||||||||    
T  26467379 aaaactagtctatacagacctctaacttgttcacccaaaccaatcatcttctgggagtgaaggtcctgtaagaaacacttcttgtcatgaaa 26467470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 30584044 - 30583827
Alignment:
Q  38 aggataaagtttggacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaatggtcaagtttttattggtg 137  Q
    |||||| ||||  ||||||||||| | |||| ||||||| ||||| | |||| | || ||| |||| ||||||||||| ||||| || ||| ||||||||    
T  30584044 aggatatagttgagacatatgagataatctcatatgagatacatgtcctaacctgaaatgcaataatgtagaagaagggatggttaaatttgtattggtg 30583945  T
Q  138 atgaaaacatgataaacaaaagaattattgtataaaggaaaagcagaaaaacctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatca 237  Q
        ||| |||||  ||| || |||||||| ||| ||||| |  | |  || ||||| | | |||||| |||||||||| ||| |||||||||||||||     
T  30583944 g---aaatatgattgacagaaaaattattgcatagaggaagattaaaggaatctaaagctaatctataaagaccttcaatctgatcacccaaaccaatct 30583848  T
Q  238 tcttttgggagtcaagatcct 258  Q
    |||| | ||||| ||||||||    
T  30583847 tcttctaggagtgaagatcct 30583827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 538
Target Start/End: Complemental strand, 23956553 - 23956487
Alignment:
Q  472 tgaaccaatgtgaagaagaaacaatctgttcatttgcaccagaatctaacaatcatatatcagattt 538  Q
    ||||||||||| | ||||||||||  |||||||| |||||||| ||||| |  ||||||||||||||    
T  23956553 tgaaccaatgtaatgaagaaacaacatgttcattagcaccagagtctaaaagccatatatcagattt 23956487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 15941252 - 15941161
Alignment:
Q  171 aaaggaaaagcagaaaaacctaaaacaagtctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    |||||||| ||||||||| |||| || | |||||||||||||||||| || ||||| |||||||||||||| ||| ||| ||||||||||||    
T  15941252 aaaggaaatgcagaaaaatctaagactaatctatagagaccttcaaattgatcaccgaaaccaatcatcttctggaagtgaagatcctgtaa 15941161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 13436 - 13374
Alignment:
Q  200 tctatagagaccttcaaactgttcacccaaaccaatcatcttttgggagtcaagatcctgtaa 262  Q
    |||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||||||||    
T  13436 tctataaagaccttcaaattgatcacccaaaccaatcatcttctgggagtgaagatcctgtaa 13374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 565
Target Start/End: Complemental strand, 13240 - 13071
Alignment:
Q  396 gtgccaacatattcagctaaaatagatgaaccattaggtaaattgataggtttaggtgaaattttgtgaaaagagttgaaccaatgtgaagaagaaacaa 495  Q
    |||||| |||||| | |||| | ||| | ||||||||| ||||| | |||||||||  ||||||||||| | ||  ||||||| ||||  || |||||||    
T  13240 gtgccagcatattgaactaacacagaagtaccattaggcaaatttacaggtttaggcaaaattttgtgataggaagtgaaccagtgtgtggaggaaacaa 13141  T
Q  496 tctgttcatttgcaccagaatctaacaatcatatatcagattttgaagatatggaacaagtaaatatgga 565  Q
    | |||||||| || || || ||||| |  || ||||||||||| || || ||||||||||  ||||||||    
T  13140 tatgttcattagctcctgagtctaaaagccaaatatcagatttagaggaaatggaacaagagaatatgga 13071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 13582 - 13515
Alignment:
Q  51 gacatatgagagagtctcttatgagaaacatgccataacttaaagtgccataaagtagaagaaggaat 118  Q
    ||||||||||| | |||||||||||| ||||| | |||  | ||||||||||||| ||||||||||||    
T  13582 gacatatgagacaatctcttatgagagacatgacctaatctgaagtgccataaagcagaagaaggaat 13515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University