View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_90 (Length: 256)
Name: NF19192_high_90
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 6214859 - 6214620
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacactatactatact |
115 |
Q |
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| T |
6214859 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacactatactatact |
6214760 |
T |
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| Q |
116 |
atactactaattatgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6214759 |
atactactaattatgttatagtatttcctgaattaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctgccaac |
6214660 |
T |
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| Q |
216 |
tataaatggattaatatcaagtggtataagcatttggatg |
255 |
Q |
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| T |
6214659 |
tataaatggattaatatcaagtggtataagcatttggatg |
6214620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 6177239 - 6177113
Alignment:
| Q |
128 |
atgttatagtatttcctgaattaatgtgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
227 |
Q |
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| T |
6177239 |
atgttgtactatttcctgaatcaatgtgtctaatggtctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggatt |
6177140 |
T |
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| Q |
228 |
aatatcaagtggtataagcatttggat |
254 |
Q |
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| T |
6177139 |
aatatcaagtggtataagcatatggat |
6177113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 6207199 - 6207111
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacac |
104 |
Q |
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| T |
6207199 |
gaagattataccgctgcctatttaaatctcccagaagttcaaaaggctcttcatgttaaacccataaaatggtctcattgcaggtacac |
6207111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 6207025 - 6206925
Alignment:
| Q |
154 |
tgtctaatgctctttttcagtgatctgagttggacagatagtccagcaagtattctaccaactataaatggattaatatcaagtggtataagcatttgga |
253 |
Q |
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| T |
6207025 |
tgtctaatgctctttttcagtggtgtgggttggacagatagtccaactagtattctaccaactataaatcagttaatatcaagtggtataagcatatgga |
6206926 |
T |
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| Q |
254 |
t |
254 |
Q |
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| |
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| T |
6206925 |
t |
6206925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 6177389 - 6177299
Alignment:
| Q |
16 |
gaagattataccactacctatttaaatctcccagaagttcaaaaggctcttcatgttaaacgcacaaaatggtctccttgcaggtacacta |
106 |
Q |
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||||||||||| | | | |||||||| || || |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
6177389 |
gaagattatactaatgcttatttaaacctacctaaagttcaagaggctcttcatgttaaacccacaaaatggtcttcttgcaggtacacta |
6177299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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