View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_high_92 (Length: 255)

Name: NF19192_high_92
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_high_92
NF19192_high_92
[»] chr4 (2 HSPs)
chr4 (17-255)||(47038749-47038987)
chr4 (22-188)||(46702882-46703047)
[»] chr3 (4 HSPs)
chr3 (22-255)||(32744768-32745012)
chr3 (22-188)||(22835415-22835580)
chr3 (55-188)||(39153772-39153904)
chr3 (84-188)||(46859915-46860017)
[»] chr6 (3 HSPs)
chr6 (22-255)||(28137750-28137988)
chr6 (23-178)||(5043011-5043165)
chr6 (132-188)||(2973562-2973618)
[»] chr2 (2 HSPs)
chr2 (38-225)||(11690106-11690298)
chr2 (52-255)||(42361972-42362180)
[»] chr5 (2 HSPs)
chr5 (22-223)||(5887788-5887994)
chr5 (101-187)||(16451758-16451844)
[»] chr8 (3 HSPs)
chr8 (22-147)||(41365283-41365407)
chr8 (72-188)||(6598612-6598727)
chr8 (72-188)||(6674065-6674180)
[»] chr1 (4 HSPs)
chr1 (81-153)||(37167741-37167812)
chr1 (97-188)||(40122610-40122700)
chr1 (132-188)||(834565-834622)
chr1 (132-188)||(47114663-47114719)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 47038987 - 47038749
Alignment:
17 acttctgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
47038987 acttctgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacaattttgttggcagaacgtatgg 47038888  T
117 ttcctgctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtaccgtactcatcaattgtgacacggtttttg 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||| |||| |||||||||||||||    
47038887 ttcctgctgaaggcaaaatcgtggcgcgatttgtgcaggcgtgacaagatttctgggtaaggctgtcgtaccgtactcaccaatcgtgacacggtttttg 47038788  T
217 ggtggcgtgacacagttttgtctgtcactgtgaactatt 255  Q
    ||||||||||| ||||||||||||||| |||| ||||||    
47038787 ggtggcgtgacgcagttttgtctgtcattgtgtactatt 47038749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 46702882 - 46703047
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcct 121  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||  |||| ||| |||||| ||||||||| ||||| ||    
46702882 tgttgtttatgccttcaatttgagattctgagaaaactcataatcgtgacacgattatgagtggtgtgacgcgattttgtttgcagaacgtgtggtttct 46702981  T
122 gctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    ||||||||| |||||||||||||||| ||||| |||||||  ||||| |||||||||  ||||||||    
46702982 gctgaaggc-aaatcgtggcgcgattggtgcaggcgtgacgcgatttgtggataaggtcgttgtacc 46703047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 32745012 - 32744768
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtgg-----catgacacgaatttgttggcagaacgtatgg 116  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||     | |||||||| ||||||||||||||||||||    
32745012 tgttgtttatgccttcaatttgagattctgagaaaactcataatcgtgacacgattatgagtggtgtgacgtgacacgattttgttggcagaacgtatgg 32744913  T
117 ttcctgctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtac-------cgtactcatcaattgtgacacg 209  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||  ||||||||||||||| ||| ||||       ||||||||||||| |||||||     
32744912 ttcctgctgaaggcaaaatcgtggcacgatttgtgcaggcgtaacgcgatttctggataaggttgtcgtacctttggtcgtactcatcaatcgtgacac- 32744814  T
210 gtttttgggtggcgtgacacagttttgtctgtcactgtgaactatt 255  Q
    | |||||| |||||||||||  ||||||||||||||||| ||||||    
32744813 gattttggatggcgtgacacgattttgtctgtcactgtgtactatt 32744768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 22835580 - 22835415
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcct 121  Q
    |||||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||||| |||  |||||| | |||||||||||||||||||||| ||    
22835580 tgttgtgtatgccttaaatttgagattctgagaaaactcataatcgtgacacgattatgaatggtgtgacacaattttgttggcagaacgtatggtttct 22835481  T
122 gctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    |||||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||| ||| |||||    
22835480 gctgaagg-aaaatcgtggcgcgatttgtgcatgcgtgacgcgatttatggataaggttgtcgtacc 22835415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 39153904 - 39153772
Alignment:
55 aaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgcaa 154  Q
    |||||||||||| |||||||||| ||||||||  | ||||| |||| |||||||| | |||||| ||||||||||||||| |||| |||||||||||||     
39153904 aaactcataatcgtgacacgattttgagtggcgcgtcacgattttgatggcagaatggatggtttctgctgaaggcaaaa-cgtgacgcgatttgtgcag 39153806  T
155 gcgtgacatgatttctggataaggctgttgtacc 188  Q
    |||||||  ||||| ||||||||| ||| |||||    
39153805 gcgtgacgcgatttatggataaggttgtcgtacc 39153772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 46859915 - 46860017
Alignment:
84 ggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgattt-gtgcaagcgtgacatgatttctggataaggctgt 182  Q
    |||||| | ||| |||| ||||| || | |||||| |||||||||   ||||||||||||||||| ||||| |||||||| |||||||||||||||  ||    
46859915 ggcatggcgcgattttgctggcaaaatggatggtttctgctgaagc--aaatcgtggcgcgattttgtgca-gcgtgacacgatttctggataaggtcgt 46860011  T
183 tgtacc 188  Q
    ||||||    
46860012 tgtacc 46860017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 28137988 - 28137750
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcct 121  Q
    |||||| |||||||| |||||| ||||||| |||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||| ||    
28137988 tgttgtgtatgccttaaatttgagattctgagaaaactcataatcgtgacacgattatgaatggcgtgacacgattttgttggcagaacgtatggtttct 28137889  T
122 gctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtac-------cgtactcatcaattgtgacacggtttt 214  Q
    |||||||| ||||| ||||| ||||||||||| ||||||   ||||| ||||||||| ||| ||||       ||||||||||||| ||||||| | |||    
28137888 gctgaagg-aaaattgtggcacgatttgtgcaggcgtgatgcgatttatggataaggttgtcgtaccttgggtcgtactcatcaatcgtgacac-gattt 28137791  T
215 tgggtggcgtgacacagttttgtctgtcactgtgaactatt 255  Q
    ||| ||||| ||| |  ||||||| ||||||||| ||||||    
28137790 tggatggcgcgacgctattttgtcagtcactgtgtactatt 28137750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 5043011 - 5043165
Alignment:
23 gttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctg 122  Q
    |||||||||| |||||||||  |||| || |||||||||||||  ||||||||||||||||||| |||||| | |||||||||||||||||||||| |||    
5043011 gttgtttatgtcttcaatttaagattatgagaaaactcataattgtgacacgattatgagtggcgtgacacaattttgttggcagaacgtatggtttctg 5043110  T
123 ctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataagg 178  Q
    |||||||| ||||||||| |||||||||||| |||||||  ||||| |||||||||    
5043111 ctgaaggc-aaatcgtggtgcgatttgtgcaggcgtgacgcgatttgtggataagg 5043165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 2973618 - 2973562
Alignment:
132 aaatcgtggcgcgattt-gtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||  ||||||||    
2973618 aaatcgtggcgcgattttgtgca-gcgtgacacgatttctggataaggtcgttgtacc 2973562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 11690106 - 11690298
Alignment:
38 aatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcg 137  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| ||||||||||| |||  ||||| |||||||    
11690106 aatttgagattctgagaaaactcataatcatgacacgattatgaatggcatgacacgattttgtcggcataacgtatggtttctgtcgaagg-aaaatcg 11690204  T
138 tggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtac-------cgtactcatcaattgtgacacggtttttgggtggcgtg 225  Q
    ||| | |||||||||| |||||||| ||||| | ||||||| ||| ||||       ||||||||||||| ||||||| | ||||||||||||||    
11690205 tggtgggatttgtgcaggcgtgacacgatttattgataaggttgtcgtaccttggatcgtactcatcaatcgtgacac-gattttgggtggcgtg 11690298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 42361972 - 42362180
Alignment:
52 tgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtg 151  Q
    ||||||||||||||| |||||||||| ||||||||  | ||||| |||| |||||||| | |||||| ||||||||||||||| | || || |||| |||    
42361972 tgaaaactcataatcgtgacacgattttgagtggcgcgtcacgattttggtggcagaatggatggtttctgctgaaggcaaaa-catgacgagattggtg 42362070  T
152 caagcgtgacatgatttctggataaggctgttgtac-------cgtactcatcaattgtgacacggtttttgggtggcgtgacacagttttgtctgtcac 244  Q
    || |||||||  ||||| ||||||| | ||| ||||       ||||||||||||| ||||||| | |||||||| ||| | | |  |||||||||||||    
42362071 caggcgtgacgcgatttgtggataacgttgtcgtaccttgggtcgtactcatcaatcgtgacac-gattttgggtagcgcggcgcgattttgtctgtcac 42362169  T
245 tgtgaactatt 255  Q
    |||| ||||||    
42362170 tgtgtactatt 42362180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 5887994 - 5887788
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcct 121  Q
    |||||| |||||||| |||||| |||| ||  ||||||||||||| |||||||||||||| |||| |  ||||| |||||||||||||||||||||| ||    
5887994 tgttgtgtatgccttaaatttgagattttgaaaaaactcataatcgtgacacgattatgaatggcgtagcacgattttgttggcagaacgtatggtttct 5887895  T
122 gctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgta-------ccgtactcatcaattgtgacacggtttt 214  Q
    |||||||| |||||||||| |||||||||||| | |||||  ||||| ||||||||| ||| |||        ||||||||||||| ||||||||| |||    
5887894 gctgaagg-aaaatcgtggtgcgatttgtgcaggtgtgacgcgatttatggataaggttgtcgtaacttgggtcgtactcatcaatcgtgacacgg-ttt 5887797  T
215 tgggtggcg 223  Q
    |||||||||    
5887796 tgggtggcg 5887788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 16451758 - 16451844
Alignment:
101 ttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgattt-gtgcaagcgtgacatgatttctggataaggctgttgtac 187  Q
    ||||||||| | |||||| |||||||||  || ||||||||||||||| || || |||||||  ||||||||||||||||||||||||    
16451758 ttggcagaatggatggtttctgctgaaga-aatatcgtggcgcgattttgtacaggcgtgacgcgatttctggataaggctgttgtac 16451844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 41365407 - 41365283
Alignment:
22 tgttgtttatgccttcaatttgtgattctgtgaaaactcataatcatgacacgattatgagtggcatgacacgaatttgttggcagaacgtatggttcct 121  Q
    |||||| |||||||| |||||| |||| || |||||||||||||| |||||||||||||| | || |||||||| |||||||||||||||||||||| ||    
41365407 tgttgtgtatgccttaaatttgagattttgagaaaactcataatcgtgacacgattatgaattgcgtgacacgattttgttggcagaacgtatggtttct 41365308  T
122 gctgaaggcaaaatcgtggcgcgatt 147  Q
    |||||||| ||||| |||| ||||||    
41365307 gctgaagg-aaaattgtggtgcgatt 41365283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 6598612 - 6598727
Alignment:
72 acgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctg 171  Q
    |||||| ||||||||| | ||||| |||| |||||||| |  |||||  ||||||||||||| ||||||||||||| ||||| | |||||  ||||| ||    
6598612 acgattttgagtggcacgtcacgattttggtggcagaatgggtggtttatgctgaaggcaaa-tcgtggcgcgattggtgcaggtgtgacgcgatttgtg 6598710  T
172 gataaggctgttgtacc 188  Q
    ||||||| ||| |||||    
6598711 gataaggttgtcgtacc 6598727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 6674065 - 6674180
Alignment:
72 acgattatgagtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctg 171  Q
    |||||| ||||||||| | ||||| |||| |||||||| |  |||||  ||||||||||||| ||||||||||||| ||||| | |||||  ||||| ||    
6674065 acgattttgagtggcacgtcacgattttggtggcagaatgggtggtttatgctgaaggcaaa-tcgtggcgcgattggtgcaggtgtgacgcgatttgtg 6674163  T
172 gataaggctgttgtacc 188  Q
    ||||||| ||| |||||    
6674164 gataaggttgtcgtacc 6674180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 37167741 - 37167812
Alignment:
81 agtggcatgacacgaatttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgca 153  Q
    |||||| |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
37167741 agtggcgtgacacgattttgttggcagaacgtatggtttctgctgaaggc-aaatcgtggcgcgattggtgca 37167812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 40122700 - 40122610
Alignment:
97 tttgttggcagaacgtatggttcctgctgaaggcaaaatcgtggcgcgatttgtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    |||| |||||||| | |||||| ||||||||||| |||||||||| ||||| ||||| |||||||| ||||| ||||||||| ||| |||||    
40122700 tttggtggcagaatggatggtttctgctgaaggc-aaatcgtggcacgattggtgcaggcgtgacacgatttgtggataaggttgtcgtacc 40122610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 834622 - 834565
Alignment:
132 aaatcgtggcgcgatt-tgtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    |||||||||||||||| |||||| |||||||| ||||| ||||||||| ||| |||||    
834622 aaatcgtggcgcgattctgtgcaggcgtgacacgatttgtggataaggttgtcgtacc 834565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 47114663 - 47114719
Alignment:
132 aaatcgtggcgcgattt-gtgcaagcgtgacatgatttctggataaggctgttgtacc 188  Q
    ||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||    
47114663 aaatcatggcgcgattttgtgca-gcgtgacacgatttttggataaggctgttgtacc 47114719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University