View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_high_99 (Length: 250)
Name: NF19192_high_99
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_high_99 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 18790256 - 18790025
Alignment:
| Q |
16 |
atgtaaaatgaatattatagacttcaaaccattagaatgcatttatatgtcaatgaaatagatccaaatatggtttatgatgatataccatcatggcgta |
115 |
Q |
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| T |
18790256 |
atgtaaaatgaatattatagacttcaaaccattagaatggattcataggtcaatgaaatagatccaaatatgattt---atgatataccatcatgtcgta |
18790160 |
T |
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| Q |
116 |
ctttcatccatgtcgtcgaccccatttagtgggagaaaggcttagttattgttgttttgaatattataagacttcaa-ttatttannnnnnnacaaaatt |
214 |
Q |
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| T |
18790159 |
ctttcatccatgtcgccgaccccatttagtgggag-aaggcttagttgttgttgttttgaatattataagacttcaatttttttttttttttacaaaatt |
18790061 |
T |
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| Q |
215 |
atagacttcaatttgtcccaatgaacaaattttatt |
250 |
Q |
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| T |
18790060 |
atagacttcaatttgtcccaatgaacaaattttatt |
18790025 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 12890732 - 12890858
Alignment:
| Q |
41 |
aaaccattagaatgcatttatatgtcaatgaaatagatccaaatatggtttatgatgatataccatcatggcgtactttcatccatgtcgtcgaccccat |
140 |
Q |
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| T |
12890732 |
aaaccattagaaaggatttagacgtcaatgagttagatccaaatatggttt---atgatagaacactatggcgtaatttgatccatgtagccgaccccac |
12890828 |
T |
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| Q |
141 |
ttagtgggagaaaggcttagttattgttgtt |
171 |
Q |
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| T |
12890829 |
ttagtggga-taaggcttggttgttgttgtt |
12890858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 5418295 - 5418357
Alignment:
| Q |
108 |
atggcgtactttcatccatgtcgtcgaccccatttagtgggagaaaggcttagttattgttgtt |
171 |
Q |
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| T |
5418295 |
atggcgtaatttgatccatgtagtcgaccccatttagtggga-taaggcttggttgttgttgtt |
5418357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 52921237 - 52921292
Alignment:
| Q |
41 |
aaaccattagaatgcatttatatgtcaatgaaatagatccaaatatggtttatgat |
96 |
Q |
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| T |
52921237 |
aaaccattagaaaggatttagaggtcaatgaattggatccaaatatggtttatgat |
52921292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 17269063 - 17268988
Alignment:
| Q |
95 |
atgatataccatcatggcgtactttcatccatgtcgtcgaccccatttagtgggagaaaggcttagttattgttgtt |
171 |
Q |
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| T |
17269063 |
atgatagaacattatggcgtaatttgatccatgtagccgaccccatttagtggga-aaagtcttggttagtgttgtt |
17268988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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