View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_1 (Length: 824)
Name: NF19192_low_1
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 38 - 682
Target Start/End: Complemental strand, 15437236 - 15436594
Alignment:
| Q |
38 |
gatgatactttttgcagagaattctcctctatcaatggctggaggacagcttgaaatcagcacagaaactatcagaggacctgtctgtactgaagttgga |
137 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15437236 |
gatgatactttttgcagagaattctcctctatcaatggctggaggacagcttgaaatcagcacagaaactatcagaggacctatctgtactgaagttgga |
15437137 |
T |
|
| Q |
138 |
ttctcaaggtgaaggtatcgatgaatatctagtgtcatctaactgtgttcagttatagattatagattggagaaaatttaatgtaaatggcatagaagcc |
237 |
Q |
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| T |
15437136 |
tcctcaagttgaaggtatcgatgaatatctagtgtcatctaactgtgttcagttatagattatagattggagaaaatttaacgtaaatggcatagaagc- |
15437038 |
T |
|
| Q |
238 |
catatatatgatgcatttatgaagtgttgtttattttaaagctcattctctaatttgttagccttgttgaaactcatctatgcatttatgaagtgctatt |
337 |
Q |
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| T |
15437037 |
---acatatgatgcatttatgaagtgttgtttattttaaagctcatactctaatttgttagccttgttgaaactcatctatgcatttatgaagtgctatt |
15436941 |
T |
|
| Q |
338 |
tcagtgatcgagaggctgtcatttcaaattgaaagtgccgaccagatataaaaaacctcccatcaattggaaattcaatgaatactgtgaccggacattc |
437 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
15436940 |
tcagtgattgagaagctgtcatttcaaattgaaagtgccgaccagatataaaaaacctcccatcaattggaaaatcaatgaattctgtgaccggacattc |
15436841 |
T |
|
| Q |
438 |
tgtctt--gacttagtgactgttttctgcttacactgcttcatctactagaagttttgcagaaagttggggaggatgttttgccaggggtgagcactaca |
535 |
Q |
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|||||| || | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15436840 |
tgtcttgggattgagaaactgttttctgcttacactgcttcatctactagaagttttgcagaaagttggggaggatgttttgccaggggtgagcactaca |
15436741 |
T |
|
| Q |
536 |
aaattttggcaaaactgagttttgatataagtttcctatcttgcaatgaaagtttgttaagaatctgttatatgaaatatgtcaacattatttaggacac |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15436740 |
aaattttggcaaaactgagttttgatataagtttcctatcttgcaatgaaagtttgttaagaatctgttatatgaaatatgtgaacattatttaggacac |
15436641 |
T |
|
| Q |
636 |
aataatatagaaatgatgatgaatgattcaagctttattaagaaatc |
682 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15436640 |
aataatatagaaatgatgatgaatgattcaagctttattaagaaatc |
15436594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 677 - 816
Target Start/End: Complemental strand, 15436559 - 15436420
Alignment:
| Q |
677 |
gaaatcatacttcacaatttttgcaatttactttatgttactctttgggatctctaaattctaaaatctcctgtgtcatatattttgcaatttttgcagt |
776 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15436559 |
gaaatcatacttcacaatttttgcaatttactttatgttactctttgggatctctaaattctagaatctcctgtgtcatatattttgcaatttttgcagt |
15436460 |
T |
|
| Q |
777 |
tatctataaatatatgactatattgcttgaatgatgatgt |
816 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| |
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| T |
15436459 |
taaatataaatatatgactatattgcttgaatgatgatgt |
15436420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 489 - 682
Target Start/End: Original strand, 17679201 - 17679396
Alignment:
| Q |
489 |
ttttgcagaaagttggggaggatgttttgccaggggtgagcactacaaaattttggcaaaactgagttttgatataagtttcctatcttgcaatgaaagt |
588 |
Q |
| |
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|||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||| | |
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| T |
17679201 |
ttttgcagaaagttggggggaatgttttgcctggggtgagcactacaaaattttggataaactgagttttgatatgtgttttctatcttgtcatgaattt |
17679300 |
T |
|
| Q |
589 |
ttgttaagaatctgttatatgaaatatgtc-aacattatttaggacac-aataatatagaaatgatgatgaatgattcaagctttattaagaaatc |
682 |
Q |
| |
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|| | ||||| |||||||||||||||||| ||||| |||| |||| | ||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
17679301 |
tttattagaatttgttatatgaaatatgtcaaacataatttgggacgcaaataatatagaaaagatgatgaatggttcaagctttattaagaaatc |
17679396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 38 - 162
Target Start/End: Original strand, 17677237 - 17677361
Alignment:
| Q |
38 |
gatgatactttttgcagagaattctcctctatcaatggctggaggacagcttgaaatcagcacagaaactatcagaggacctgtctgtactgaagttgga |
137 |
Q |
| |
|
|||||| |||||||||| | ||||||| ||||| |||||||| |||||||| ||||||| ||||| ||||||||| |||| ||||||||||||||| |
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| T |
17677237 |
gatgatgctttttgcagtcacttctcctttatcagtggctggaagacagcttaaaatcaggggagaaagaatcagaggatctgtatgtactgaagttgga |
17677336 |
T |
|
| Q |
138 |
ttctcaaggtgaaggtatcgatgaa |
162 |
Q |
| |
|
| ||||||||||||||||| ||||| |
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| T |
17677337 |
tcctcaaggtgaaggtatcaatgaa |
17677361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 15459446 - 15459370
Alignment:
| Q |
38 |
gatgatactttttgcagagaattctcctctatcaatggctggaggacagcttgaaatcagcacagaaactatcagag |
114 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||| | |||||||||||||| |
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| T |
15459446 |
gatgatgctttttgcagagagtcctcctctatcaatggctggaggacagcctgaaatcatgagagaaactatcagag |
15459370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 17678078 - 17678161
Alignment:
| Q |
332 |
gctatttcagtgatcgagaggctgtcatttcaaattgaaagtgccgaccagatataaaaaacctcccatcaattggaaattcaatg |
417 |
Q |
| |
|
|||||||||||||| |||| | || ||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| |||||| |
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| T |
17678078 |
gctatttcagtgattgagaagttgccatttaaaattgaaagtgcggaccag--ataaaaaacctcccttcaattggaaaatcaatg |
17678161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 197 - 318
Target Start/End: Original strand, 17677717 - 17677835
Alignment:
| Q |
197 |
ttatagattggagaaaatttaatgtaaatggcatagaagcccatatatatgatgcatttatgaagtgttgtttattttaaagctcattctctaatttgtt |
296 |
Q |
| |
|
||||||||||||| || |||||||||||||| | ||||| ||| ||| ||||||| ||||| | || |||||||| |||||||| ||||||||| | |
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|
| T |
17677717 |
ttatagattggagggaaattaatgtaaatggctttgaagcacatgcata--atgcattcatgaaattttatttatttt-aagctcatactctaattttta |
17677813 |
T |
|
| Q |
297 |
agccttgttgaaactcatctat |
318 |
Q |
| |
|
||||||||||||| |||||| |
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|
| T |
17677814 |
ttccttgttgaaacttatctat |
17677835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 489 - 682
Target Start/End: Complemental strand, 14666918 - 14666723
Alignment:
| Q |
489 |
ttttgcagaaagttggggaggatgttttgccaggggtgagcactacaaaattttggcaaaactgagttttgatataagtttcctatcttgcaatgaaagt |
588 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||| | |
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|
| T |
14666918 |
ttttgcagaaagttggggagaatgttttgcctggggtgagcactacaaaattttggataaactgagttttgatatgtgttttctatcttgtcatgaattt |
14666819 |
T |
|
| Q |
589 |
ttgttaagaatctgttatatgaaatatgtc-aacattatttaggacac-aataatatagaaatgatgatgaatgattcaagctttattaagaaatc |
682 |
Q |
| |
|
|| | ||||| | |||||||||||||||| ||||| |||| |||| | ||||||||||||| ||||||| ||| ||||||||||||||||||||| |
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| T |
14666818 |
tttattagaattttttatatgaaatatgtcaaacataatttgggacgcaaataatatagaaaagatgatgcatggttcaagctttattaagaaatc |
14666723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 38 - 162
Target Start/End: Complemental strand, 14668893 - 14668769
Alignment:
| Q |
38 |
gatgatactttttgcagagaattctcctctatcaatggctggaggacagcttgaaatcagcacagaaactatcagaggacctgtctgtactgaagttgga |
137 |
Q |
| |
|
|||||| |||||||||| | ||||||| ||||| |||||||| |||||||| ||||||| ||||| ||| ||||| |||| ||||||||||||||| |
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| T |
14668893 |
gatgatgctttttgcagtcacttctcctttatcagtggctggaagacagcttaaaatcaggggagaaagaatctgaggatctgtatgtactgaagttgga |
14668794 |
T |
|
| Q |
138 |
ttctcaaggtgaaggtatcgatgaa |
162 |
Q |
| |
|
| ||||||||||||||||| ||||| |
|
|
| T |
14668793 |
tcctcaaggtgaaggtatcaatgaa |
14668769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 14668044 - 14667961
Alignment:
| Q |
332 |
gctatttcagtgatcgagaggctgtcatttcaaattgaaagtgccgaccagatataaaaaacctcccatcaattggaaattcaatg |
417 |
Q |
| |
|
|||||||||||||| |||| | || ||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| |||||| |
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| T |
14668044 |
gctatttcagtgattgagaagttgccatttaaaattgaaagtgcggaccag--ataaaaaacctcccttcaattggaaaatcaatg |
14667961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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