View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_10 (Length: 671)
Name: NF19192_low_10
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 51033676 - 51034318
Alignment:
| Q |
18 |
ataagctgaggctttagaaacttgtcaaaccaatcagatgactctttcaccatgaattttgttatttggtgctcaattccaggttctgcaataaactaca |
117 |
Q |
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| T |
51033676 |
ataagctgaggctttagaaacttgtcaaaccaatcagatgactctttcaccatgaattttgttatttggtgctcaattccaggttctgcaataaactaca |
51033775 |
T |
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| Q |
118 |
tgtcaatgcaatcaatt-acaaagctttagttcaagcgacttcattaccatttctattattacgagtagtttaaaattaaatggtgcaacattggaaatg |
216 |
Q |
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| T |
51033776 |
tgtaaatgcaatcaatttacaaagctttagttcaagcgacttcattaccatttctattattaggagtagtttaaaattaaatggtgcaacattggaaatg |
51033875 |
T |
|
| Q |
217 |
aaaattgcaggttgcggtcaatattaactctaagcnnnnnnn-caacatttggcaggcgtgagatttctcaacaaagtgatattgaccatacaatataag |
315 |
Q |
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| T |
51033876 |
aaatttgcaggttgcggtcaatattaactctaagcttttttttcaacattcggcaggcgtgagatttctcaacaaagtgatattgaccatacaacata-- |
51033973 |
T |
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| Q |
316 |
tacatacctggaaatcatctgtgcggtgaaaagcttcgtatgccttgcttgcttttgccctcggaatttccaagccggctaggggacacctaggatcttc |
415 |
Q |
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| T |
51033974 |
--catacctggaaatcatctgtgcggtgaaaagcttcgtatgccttgcttgcttttgccctcggaatttccaagccggctaggggacacctaggatcttc |
51034071 |
T |
|
| Q |
416 |
cgcacctagatttaggaacacccaagtgaatgcttcaatttccaagttaaaatcaaaacccccaaaagtatctaaattgactaatacggatggataggtc |
515 |
Q |
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| T |
51034072 |
cgcacctagatttaggaacacccaagtgaatgcttcaatttccaagttaaaatcaaaacccccaaaagtatctaaattgactaatacggatggataggtc |
51034171 |
T |
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| Q |
516 |
taataagtaattgatatatcatcaagaagtgcaaaacttgtattgcagtgctttcaacacatcaatttgaatatgaatattgtttttaactacaatttgg |
615 |
Q |
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| T |
51034172 |
taataagtaattgatatatcatcaagaagtgcaaaacttgtattgcagtgctttcaacacatcaatttgaatatgaatattgtttttaactacaatttgg |
51034271 |
T |
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| Q |
616 |
aaatgttgaataaacaataaatacaaggatcttaccattgagaataa |
662 |
Q |
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| T |
51034272 |
aaatgttgaataaacaataaatacaaggatcttaccattgagaataa |
51034318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 51040715 - 51040906
Alignment:
| Q |
18 |
ataagctgaggctttagaaacttgtcaaaccaatcagatgactctttcaccatgaattttgttatttggtgctcaattccaggttctgcaataaactaca |
117 |
Q |
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| T |
51040715 |
ataagttgaggctttagaaacttgtcaaaccaatcagatgactctttcaccatgaatttcgttatttggtgctcaattccaggttctgcaataaactgca |
51040814 |
T |
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| Q |
118 |
tgtcaatgcaatcaattacaaagcttta--------gttcaagcgacttcattaccatttctattattacgagtagtttaaaattaaatggt |
201 |
Q |
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| T |
51040815 |
tatcaaagcaatcaattgcaaagctttagttcaactgttcaagtgacttcattatcatttctactattatgagtagtttgaaattaaatggt |
51040906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 489 - 662
Target Start/End: Original strand, 51041139 - 51041313
Alignment:
| Q |
489 |
aaattgactaatacggatggataggtctaataagtaattgatatatcatcaagaagtgcaaaacttgtattgcagtgctttcaacacatcaatttgaata |
588 |
Q |
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| T |
51041139 |
aaattgattaatacgtatgcataggtctaataagtaattgatatataattaagaagtgcaaaacttgtattgtagtgcattccacacatcaatttgcata |
51041238 |
T |
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| Q |
589 |
tgaatattgtttttaactacaatttggaaatgttgaataaacaa-taaatacaaggatcttaccattgagaataa |
662 |
Q |
| |
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|||||||| ||| |||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
51041239 |
tgaatattatttccaactacaatttgaaagtgttgagtaaacaacaaaatacaaggatcttaccattgagaataa |
51041313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 261 - 434
Target Start/End: Original strand, 51040957 - 51041126
Alignment:
| Q |
261 |
acatttggcaggcgtgagatttctcaacaaagtgatattgaccatacaatataagtacatacctggaaatcatctgtgcggtgaaaagcttcgtatgcct |
360 |
Q |
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| T |
51040957 |
acatttggcaggtgtgagatttctcaacaaagtgag--tgaccatacaaag--agtgcatacctggaaattatctacacggtcaaagtttttgtgtgcct |
51041052 |
T |
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| Q |
361 |
tgcttgcttttgccctcggaatttccaagccggctaggggacacctaggatcttccgcacctagatttaggaac |
434 |
Q |
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| T |
51041053 |
ggcttgcttttgcccttggaatctccaatccggcaagaggacacctaggatcttccgcacctagagttaggaac |
51041126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 372
Target Start/End: Original strand, 37641886 - 37642239
Alignment:
| Q |
20 |
aagctgaggctttagaaacttgtcaaaccaatcagatgactctttcaccatgaattttgttatttggtgctcaattccaggttctgcaataaactacatg |
119 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
37641886 |
aagccgaggctttagaaacttctcaaaccaatcagatgactctttcaccatgaatttcgttatttggtgctcaatttcaggttcagcaataaactgcata |
37641985 |
T |
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| Q |
120 |
tcaatgcaatcaattacaaagctttagttcaagcgacttcattaccatttctattattacgagtagtttaaaattaaatggtgcaacattggaaatgaaa |
219 |
Q |
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|||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||| |
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| T |
37641986 |
tcaaagcaatcaattgcaaatcttt-----aagcgacttcattaccatttctattattacgagtagttttaaattaaatggtgcaacactgaaa---aaa |
37642077 |
T |
|
| Q |
220 |
attgcaggttgcggtcaatatt---------aactctaagcnnnnnnncaacatttggcaggcgtgagatttctcaacaaagtgatattgaccatacaat |
310 |
Q |
| |
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|||||||||||| | ||||||| || | | | | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37642078 |
attgcaggttgcagccaatattttttctttcaaattgatgagggaagtccacatttggcaggcgtgagatttctcaacaaagtgatattgaccatacaat |
37642177 |
T |
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| Q |
311 |
ataagtacatacctggaaatcatctgtgcggtgaaaagcttcgtatgccttgcttgcttttg |
372 |
Q |
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|| ||||||||| ||||||| || || |||||||||| |||||||||||| |||||||||| |
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| T |
37642178 |
atgagtacatacatggaaattatttgcgcggtgaaaaacttcgtatgcctgacttgcttttg |
37642239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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