View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_102 (Length: 249)
Name: NF19192_low_102
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_102 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 47544217 - 47543980
Alignment:
| Q |
2 |
ctgaacttaaacgaatcacatgtgctttttattatgcagatacgactacgcccaaaaagaagctgatcaaagatgtttcacaggatttctatactgctgg |
101 |
Q |
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| T |
47544217 |
ctgaacttaaacgaatcacatgtgctttttattatgcagatacgactacgcccaaaaagaagctgatcaaagatgtttcacaggatttctatactgctgg |
47544118 |
T |
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| Q |
102 |
attttgtcctggtgccattgtgtacttttcatatgatgtttcaaaaggtgagttccttgtgtgagaaggattattttccagaaatgtctcactttgtgat |
201 |
Q |
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| T |
47544117 |
attttgtcctggtgccattgtgtacttttcatatgatgtttcaaaaggtgagttccttgtgtgagaaggattattttccagaaatgtctcactttgtgat |
47544018 |
T |
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| Q |
202 |
tttatagtttgatttatgatacatgttcagttgttcat |
239 |
Q |
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| T |
47544017 |
tttatagtttgatttatgatacatgttcagttgttcat |
47543980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 42699778 - 42699540
Alignment:
| Q |
2 |
ctgaacttaaacgaatcacatgtgctttttattatgcagatacgactacgcccaaaaagaagctgatcaaagatgtttcacaggatttctatactgctgg |
101 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42699778 |
ctgaacttaaacgaatcacatgcgccttttattatgcagatactattacgcccaagaagaagctaatcaaagatgtttcacaggatttctatactgctgg |
42699679 |
T |
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| Q |
102 |
attttgtcctggtgccattgtgtacttttcatatgatgtttcaaaaggtgagttccttgtgtgagaaggattattttccagaa-atgtctcactttgtga |
200 |
Q |
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| T |
42699678 |
attttgtcctggtgccattgtgtacttctcgtatgatgtttctaaaggtgagttccttgtgtgagaaggattattttccaaaacacgtctcgctttgtga |
42699579 |
T |
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| Q |
201 |
ttttatagtttgatttatgatacatgttcagttgttcat |
239 |
Q |
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| T |
42699578 |
atttacagtttgatttattatacatgttcagttgttcat |
42699540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 831 - 967
Alignment:
| Q |
16 |
atcacatgtgctttttattatgcagatacgactacgcccaaaaagaagctgatcaaagatgtttcacaggatttctatactgctggattttgtcctggtg |
115 |
Q |
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| T |
831 |
atcacatgtgctttttataatgcagatactactccacc---taagaagctggtcaaagatatttcccaggatttctatactgttggattttgccctggtg |
927 |
T |
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| Q |
116 |
ccattgtgtacttttcatatgatgtttcaaaaggtgagtt |
155 |
Q |
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| T |
928 |
ccattgtgtacttctcatatgatgtttcaaaaggtgagtt |
967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 8018795 - 8018659
Alignment:
| Q |
16 |
atcacatgtgctttttattatgcagatacgactacgcccaaaaagaagctgatcaaagatgtttcacaggatttctatactgctggattttgtcctggtg |
115 |
Q |
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| T |
8018795 |
atcacatgtgctttttataatgcagatactactccacc---taagaagctggtcaaagatatttcccaggatttctatactgttggattttgccctggtg |
8018699 |
T |
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| Q |
116 |
ccattgtgtacttttcatatgatgtttcaaaaggtgagtt |
155 |
Q |
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| T |
8018698 |
ccattgtgtacttctcatatgatgtttcaaaaggtgagtt |
8018659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 7967774 - 7967851
Alignment:
| Q |
58 |
aagaagctgatcaaagatgtttcacaggatttctatactgctggattttgtcctggtgccattgtgtacttttcatat |
135 |
Q |
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| T |
7967774 |
aagaagctgatcaaagacttctcccaagatttttatactgctggattttctcctggtgccattgtgtacttatcatat |
7967851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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