View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_104 (Length: 248)
Name: NF19192_low_104
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6214560 - 6214320
Alignment:
| Q |
1 |
tttatatgtaacattgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaat |
100 |
Q |
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| T |
6214560 |
tttatgtgtaacaatgcttgtttttgttattatttaataataatgcagtggagatatagatggacgtgttcccataatctcaacaaagtattcaataaat |
6214461 |
T |
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| Q |
101 |
tccttaaaactacctgtacatacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatatatactaatta |
200 |
Q |
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| T |
6214460 |
tccttaaaactacatgtacgtacagcatggcgtccatggtacactggaaaagaggtaaagaaacattaatatatatcactattacaatatatactaatta |
6214361 |
T |
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| Q |
201 |
agaactttaagccacttatagataacctactacagtattat |
241 |
Q |
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| T |
6214360 |
agaactttaagccacttatagataacctactacattattat |
6214320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 6177025 - 6176895
Alignment:
| Q |
30 |
ttatttaataataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatg |
129 |
Q |
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| T |
6177025 |
ttatctaataataatgcagtggagatatagatggacgtgttcctataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatg |
6176926 |
T |
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| Q |
130 |
gcgtccatggtacactggaaaagaggtaaag |
160 |
Q |
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| T |
6176925 |
gcgtccatggtacactggaaaagaggtaaag |
6176895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 6206827 - 6206706
Alignment:
| Q |
38 |
taataatgcagtggagatatagatggacgtgttcccataacctcaacaaagtattcaataaattccttaaaactacctgtacatacagcatggcgtccat |
137 |
Q |
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| T |
6206827 |
taataatgcagtggtgatttagatgggcgtgttcccataacctcaacaaagtattcaataaattccttaaaactgcctgtgcatacagcatggcgtccat |
6206728 |
T |
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| Q |
138 |
ggtacactggaaaagaggtaaa |
159 |
Q |
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| T |
6206727 |
ggtacactggaaaagaggtaaa |
6206706 |
T |
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