View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_105 (Length: 248)

Name: NF19192_low_105
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_105
NF19192_low_105
[»] chr6 (1 HSPs)
chr6 (26-184)||(20495605-20495763)
[»] chr1 (2 HSPs)
chr1 (137-233)||(24755038-24755134)
chr1 (148-233)||(42669124-42669209)
[»] chr4 (3 HSPs)
chr4 (136-233)||(40283818-40283914)
chr4 (151-225)||(23494299-23494373)
chr4 (160-233)||(6419866-6419938)
[»] chr5 (2 HSPs)
chr5 (136-222)||(4241511-4241597)
chr5 (136-236)||(15089073-15089173)
[»] chr2 (3 HSPs)
chr2 (148-230)||(11862193-11862275)
chr2 (149-215)||(35436206-35436272)
chr2 (160-233)||(25319118-25319190)
[»] chr8 (3 HSPs)
chr8 (150-233)||(1228938-1229021)
chr8 (138-226)||(4187248-4187335)
chr8 (138-233)||(35749071-35749165)
[»] chr7 (1 HSPs)
chr7 (151-226)||(43230767-43230841)


Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 20495605 - 20495763
Alignment:
Q  26 tcctttaagtttaacatttgcaccatataatttttatgtagttgttttggtttcgaattgattatttatgtcagtaaaactgaacatgtaatcctttaan 125  Q
    ||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||  |||||||||||     
T  20495605 tcctttaagtttaacatttacaccatattatctttatgtagttgttttggtttcgaattggttatttatgtgagtaaaactgaacagataatcctttaat 20495704  T
Q  126 nnnnnncattacaaattgatcacttttttcatcgaactttgttaaaagttgcttacata 184  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20495705 ttttttcattacaaattgatcacttttttcatcgaactttgttaaaagttgcttacata 20495763  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 24755134 - 24755038
Alignment:
Q  137 caaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||| || ||||||||||| |||||||||||||  |||||||||  |||||||||||| |||| |||| |||||||||||||||||| ||||||    
T  24755134 caaattggtcccttttttcatccaactttgttaaaaagtgcttacatggccatttaacattgaggtagaaggtccaaaaagtgtttatgacaccaaa 24755038  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 42669209 - 42669124
Alignment:
Q  148 cttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||||||| ||||||||| |||  ||||||||| |||||||||| || |||| |||| |||||||||||||||||| ||||||    
T  42669209 cttttttcatccaactttgttcaaaagtgcttacatgaccatttaacgttgaggtggaaggtccaaaaagtgtttatgacaccaaa 42669124  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 40283818 - 40283914
Alignment:
Q  136 acaaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||||||| |||| |||||| |||||||||| ||  |||||| || ||| ||||||||| |||| |||| |||||||||||||||||| ||||||    
T  40283818 acaaattgatctctttcttcatccaactttgttataaagtgctta-atgaccttttaacattgaggtggaaggtccaaaaagtgtttatgacaccaaa 40283914  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 225
Target Start/End: Complemental strand, 23494373 - 23494299
Alignment:
Q  151 ttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatg 225  Q
    |||| ||| |||||||||||||  ||||||||| || |||||||||  |||| ||||||||||||| ||||||||    
T  23494373 tttttatccaactttgttaaaaagtgcttacatgactatttaacatcgaggtggaagatccaaaaaatgtttatg 23494299  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 6419866 - 6419938
Alignment:
Q  160 aactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||| |||||  |||||||| |||||||||||||| |||| ||||||||||||| |  |||||| ||||||    
T  6419866 aactttgctaaaaagtgcttacaaaaccatttaacatt-aggtggaagatccaaaaaatacttatgacaccaaa 6419938  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 4241511 - 4241597
Alignment:
Q  136 acaaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgttt 222  Q
    |||||||||||  |||||||||  |||||||||||||  | ||||||| ||||||||||||| |||| |||  ||||||||||||||    
T  4241511 acaaattgatccattttttcatacaactttgttaaaaagttcttacatgaccatttaacattgaggtcgaatgtccaaaaagtgttt 4241597  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 15089073 - 15089173
Alignment:
Q  136 acaaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaata 235  Q
    |||||||| || || |||||||| | |||||||||||    ||||||| ||||||||||||| |||| |||| ||||||||| |||||||| || |||||    
T  15089073 acaaattggtccctcttttcatccagctttgttaaaaagcacttacatgaccatttaacattgaggtggaaggtccaaaaagcgtttatgacactaaata 15089172  T
Q  236 t 236  Q
    |    
T  15089173 t 15089173  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 11862193 - 11862275
Alignment:
Q  148 cttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgatacc 230  Q
    ||||||||||| |||||  ||||||  |||| ||||||||||||||||||  ||| |||| ||||||||||||| ||||||||    
T  11862193 cttttttcatccaacttccttaaaaagtgctcacataaccatttaacattggggtggaaggtccaaaaagtgttaatgatacc 11862275  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 35436206 - 35436272
Alignment:
Q  149 ttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaa 215  Q
    |||||||||| |||||||||||||  || |||||| |||||||||||||||||| |||| |||||||    
T  35436206 ttttttcatccaactttgttaaaaaatgtttacatgaccatttaacattaaggtggaaggtccaaaa 35436272  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 233
Target Start/End: Complemental strand, 25319190 - 25319118
Alignment:
Q  160 aactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    |||||||||||||  || ||| || ||||||||||||| |||| |||| | |||||||||||||||| ||||||    
T  25319190 aactttgttaaaaaatgattatatgaccatttaacattgaggtggaaggt-caaaaagtgtttatgacaccaaa 25319118  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 1228938 - 1229021
Alignment:
Q  150 tttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||||  |||||||||||||  || ||| || |||||||||||||  ||| |||| |||||||||| ||||||||||||||    
T  1228938 tttttcattcaactttgttaaaaagtgtttaaatgaccatttaacattgcggtagaaggtccaaaaagtatttatgataccaaa 1229021  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 4187248 - 4187335
Alignment:
Q  138 aaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatga 226  Q
    |||||||| | |||||||||| |||||||||||||  || |||||| | ||||||||||| |||| |||| |||||  |||||||||||    
T  4187248 aaattgattaattttttcatctaactttgttaaaa-atgtttacatgatcatttaacattgaggtggaaggtccaattagtgtttatga 4187335  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 35749165 - 35749071
Alignment:
Q  138 aaattgatcacttttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatgataccaaa 233  Q
    ||||||||| ||||||||||| ||||||| |||||  ||||||||| | ||||||||||| | ||  ||  | |||| ||||||||||||||||||    
T  35749165 aaattgatc-cttttttcatccaactttggtaaaaagtgcttacatgatcatttaacattgatgtcaaaagttcaaagagtgtttatgataccaaa 35749071  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 43230767 - 43230841
Alignment:
Q  151 ttttcatcgaactttgttaaaagttgcttacataaccatttaacattaaggttgaagatccaaaaagtgtttatga 226  Q
    |||||||| ||||||||||||| | |||||||  ||||||||| ||| ||||  | ||||||||||||||||||||    
T  43230767 ttttcatctaactttgttaaaaat-gcttacaagaccatttaatattgaggtgaaggatccaaaaagtgtttatga 43230841  T

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