View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_108 (Length: 245)

Name: NF19192_low_108
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_108
NF19192_low_108
[»] chr2 (2 HSPs)
chr2 (1-245)||(41211240-41211484)
chr2 (1-245)||(41201191-41201435)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41211484 - 41211240
Alignment:
Q  1 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41211484 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 41211385  T
Q  101 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41211384 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 41211285  T
Q  201 ggataacctgaatcaccaattatatattcccttatctctgctcct 245  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  41211284 ggataacctgaatcaccaattatatattcccttatttctgatcct 41211240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41201435 - 41201191
Alignment:
Q  1 aaacaagaataatcctcggcagccgatgtttgtctggccgccacatttttccacgaatgattttccacatctccttaagccttgtcaatgctctttgtgc 100  Q
    |||||||||||||||| ||||  ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41201435 aaacaagaataatccttggcaaacgatgtttgtccggccgccacatatttccacgaatgattctccacatctccttaagccttgtcaatgctctttgtgc 41201336  T
Q  101 caccatcctagtttctaaatgcagcttattaaacttagcttttggttctgactctaagatttctttctcttcataagggacaacaaggtaaggcaattga 200  Q
    ||||||||| ||| | ||||||||||| ||||| | || |||||  ||||||||||||| ||||||||||| |||||| |||||||| ||||||||| ||    
T  41201335 caccatccttgttgccaaatgcagcttgttaaaatgagtttttgcctctgactctaagagttctttctctttataaggaacaacaagataaggcaataga 41201236  T
Q  201 ggataacctgaatcaccaattatatattcccttatctctgctcct 245  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  41201235 ggataacctgaatcaccaattatatattcccttatttctgatcct 41201191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University