View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_115 (Length: 239)
Name: NF19192_low_115
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_115 |
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| [»] scaffold0735 (1 HSPs) |
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Alignment Details
Target: scaffold0735 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 1455 - 1244
Alignment:
| Q |
12 |
cagagacgtagattaagaataatagcttacatgctattttgctgtgtgaaagaggagttgcagattcaagatgtgatgaagagatgcgaacaaagatcca |
111 |
Q |
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| T |
1455 |
cagagacgtagattaagaataataacttacatgctattttgctgtgtgaaagaggagttgcagattcaagatgtgatgaagagatgcgaacaaagatcca |
1356 |
T |
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| Q |
112 |
ttggcaaatcacgtggaaggaagagaaaaaagataatataaaaaagtagttaagga--gagattaggattagagagattcgaaagaaggcgttcaaagga |
209 |
Q |
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| T |
1355 |
ttggcaaatcacgtggaaggaagagaaaaaagataatataaaaaagtagttaaggagagagattaggattagagagattcaaaagaaggcgttcaaagga |
1256 |
T |
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| Q |
210 |
gggaatagaatg |
221 |
Q |
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|||||||||||| |
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| T |
1255 |
gggaatagaatg |
1244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 42888502 - 42888291
Alignment:
| Q |
12 |
cagagacgtagattaagaataatagcttacatgctattttgctgtgtgaaagaggagttgcagattcaagatgtgatgaagagatgcgaacaaagatcca |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42888502 |
cagagacgtagattaagaataataacttacatgctattttgctgtgtgaaagaggagttgcagattcaagatgtgatgaagagatgcgaacaaagatcca |
42888403 |
T |
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| Q |
112 |
ttggcaaatcacgtggaaggaagagaaaaaagataatataaaaaagtagttaagga--gagattaggattagagagattcgaaagaaggcgttcaaagga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42888402 |
ttggcaaatcacgtggaaggaagagaaaaaagataatataaaaaagtagttaaggagagagattaggattagagagattcaaaagaaggcgttcaaagga |
42888303 |
T |
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| Q |
210 |
gggaatagaatg |
221 |
Q |
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|||||||||||| |
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| T |
42888302 |
gggaatagaatg |
42888291 |
T |
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