View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_117 (Length: 238)
Name: NF19192_low_117
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_117 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18789920 - 18789698
Alignment:
| Q |
1 |
tgcaattaatcctgaatatactttattttcaaatgatagtaaacttgtaatttttctctcactctaatttacatgtgcatgtgatgacagtgcaattaac |
100 |
Q |
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| T |
18789920 |
tgcaattaatccttaatatactttattttcaaatgatagtaaacttgtaatttttctctcactctaatttacatgtacatgtgataacagtgcaattaac |
18789821 |
T |
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| Q |
101 |
agtagaaggaggccaatgctcagagatacacgataactgttctgttggcaattgcaatgattattgtaaagtcctttatggtttgaatggattaggttct |
200 |
Q |
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| T |
18789820 |
agtagaaggagggcaatgctcagagatatacgataactgttctgttggcaattgcaatgattattgtaaagtcctttatggtttgaatggattaggttct |
18789721 |
T |
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| Q |
201 |
tattgtgatgaattcaacatgtg |
223 |
Q |
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| T |
18789720 |
tattgtgatgacttcaacatgtg |
18789698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 18779883 - 18779661
Alignment:
| Q |
4 |
aattaatcctgaatatactttattttcaaatgatagtaaacttgtaatttttctctcactctaatttacatgtgcatgtgatgacagtgcaattaacagt |
103 |
Q |
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| T |
18779883 |
aattaatcctgaatatactttattttcaaatgatagtaaactttgaatttttctctcactctaatttacatgtgcatgtgatgatagtgcaattaacagt |
18779784 |
T |
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| Q |
104 |
agaaggaggccaatgctcagagatacacgataactgttctgttggcaattgcaatgattattgtaaagtcctttatggtttgaa---tggattaggttct |
200 |
Q |
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| T |
18779783 |
agaaggaggccaatgctcagagatatacgatagctgtgctgctggcaattgcaatgattattgtagagtcctttatggtgtgaatattgcattaggttct |
18779684 |
T |
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| Q |
201 |
tattgtgatgaattcaacatgtg |
223 |
Q |
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| T |
18779683 |
ttttgtgatgactccaacatgtg |
18779661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 18775271 - 18775208
Alignment:
| Q |
65 |
taatttacatgtgcatgtgatgacagtgcaattaacagtagaaggaggccaatgctcagagata |
128 |
Q |
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| T |
18775271 |
taatttacttgtgcatgggatcatagtacaattaacggtagaaggaggccaatgctcagagata |
18775208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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