View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_119 (Length: 238)
Name: NF19192_low_119
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_119 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 42699870 - 42700072
Alignment:
| Q |
1 |
ttattgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattacagcctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
42699870 |
ttattgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacaaactctaaatacagcctaaa |
42699969 |
T |
|
| Q |
101 |
aaacaagatcaaactaaatgataagataagattacaccttgttgattttgtttattttaaaaattgtcaatatatataa--gtcagaaaaatctaattac |
198 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42699970 |
aaacaagatcaaatcaaatgataagataagattaccctttgctgattttgtttattttaaaaattgtcaatatatataatggtcagaaaaatctaattac |
42700069 |
T |
|
| Q |
199 |
ctt |
201 |
Q |
| |
|
||| |
|
|
| T |
42700070 |
ctt |
42700072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 47544320 - 47544527
Alignment:
| Q |
1 |
ttattgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattacagcctaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47544320 |
ttattgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattatagcctaaa |
47544419 |
T |
|
| Q |
101 |
aaacaagatcaaactaaatgataagataagattacaccttgttgattttgtttattttaaaaattgtcaatatatataagtcagaaaaatctaattacct |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47544420 |
aaacaagatcaaaccaaatgataagataagattaccccttgttgatt----------------ttgtcaatatatataaatcagaaaaatctaattacct |
47544503 |
T |
|
| Q |
201 |
tggttatccttggcctgcaagctg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47544504 |
tggttatccttggcctgcaagctg |
47544527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 395 - 271
Alignment:
| Q |
4 |
ttgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattacagcctaaaaaa |
103 |
Q |
| |
|
||||| ||||||| |||||| || || ||||||||||||| || |||||||||| |||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
395 |
ttgaggagatcaattaaactctgaatggtttctgatggatggaaggtagcttccagtgtgtgattatcagggaagcgaactctaattacagcct-gaaaa |
297 |
T |
|
| Q |
104 |
caagatcaaactaaatgataagataa |
129 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
296 |
caagattgaaccaaatgataagataa |
271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 7967517 - 7967408
Alignment:
| Q |
10 |
agatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattacagcctaaaaaacaagat |
109 |
Q |
| |
|
||||||| |||||| | ||| || |||||||||| ||| ||||||||||| | ||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7967517 |
agatcaattaaactcttgatggtatctgatggatgaaaggtagcttccaatatatgattatcagggaaacgaactctaattacagcctgaaaaataagat |
7967418 |
T |
|
| Q |
110 |
caaactaaat |
119 |
Q |
| |
|
||||| |||| |
|
|
| T |
7967417 |
caaaccaaat |
7967408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 8019231 - 8019355
Alignment:
| Q |
4 |
ttgagtagatcaactaaactttggatagtttctgatggattaaatgtagcttccaacgtgtgattatcaggaaaacgaactctaattacagcctaaaaaa |
103 |
Q |
| |
|
||||| ||||||| |||||| || || ||||||||||||| || |||||||||| |||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
8019231 |
ttgaggagatcaattaaactctgaatggtttctgatggatggaaggtagcttccagtgtgtgattatcagggaagcgaactctaattacagcct-gaaaa |
8019329 |
T |
|
| Q |
104 |
caagatcaaactaaatgataagataa |
129 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
8019330 |
caagattgaaccaaatgataagataa |
8019355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University