View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_125 (Length: 233)
Name: NF19192_low_125
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_125 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27079860 - 27079645
Alignment:
| Q |
1 |
gctaaaggtgctgatgcggatcataaggtaacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttcttttgccggtt |
100 |
Q |
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| T |
27079860 |
gctaaaggtgctgatgcggatcataagataacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttcttttgctggtt |
27079761 |
T |
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| Q |
101 |
atactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttccgggaaaagatgtt |
200 |
Q |
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| T |
27079760 |
atactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgagaaaagatgtt |
27079661 |
T |
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| Q |
201 |
gaaacaaggggtggtt |
216 |
Q |
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| T |
27079660 |
gaaacaaggggtggtt |
27079645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 27066090 - 27065941
Alignment:
| Q |
51 |
taataacacgtttaaggattacgataaaaaaggtatttcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagt |
150 |
Q |
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|||||| || ||||||||||| || || ||||||||||||||||| |||||| ||| | || || ||||||| || ||| | ||||| |||| |||| |
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| T |
27066090 |
taataatacatttaaggattatgacaagaaaggtatttcttttgctagttataataaaa---ctactacttcaactaactctctcagtgatagtggtagt |
27065994 |
T |
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| Q |
151 |
ttggcnnnnnnntgggttcaacctggtaagtttttccgggaaaagatgttgaa |
203 |
Q |
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| T |
27065993 |
ttggcaaaaaacatggttcaacctggtaagtttttccgggagaagatgttgaa |
27065941 |
T |
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