View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_128 (Length: 224)

Name: NF19192_low_128
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_128
NF19192_low_128
[»] chr1 (2 HSPs)
chr1 (61-224)||(38664690-38664853)
chr1 (7-45)||(38664638-38664676)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 38664690 - 38664853
Alignment:
Q  61 ttgtcttccaatcattcatgataagttaataaatggttaatgacggctaactttcagttaccaaattcatacacaatccaaaattagggaataaatatgt 160  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38664690 ttgtcttccaattattcatgataagttaataaatggttaatgacggctaactttcagttaccaaattcatacacaatccaaaattagggaataaatatgt 38664789  T
Q  161 cttaaattaaaggaatattaattggtgatgactgaaatgtagaaacaaacccaatggagaatct 224  Q
    |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  38664790 cttaaattaaaggaatattaattggtgatgactgaaatatgtaaacaaacccaatggagaatct 38664853  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 38664638 - 38664676
Alignment:
Q  7 tggacatcatcaaagtaacaattgtcttccaatttcctt 45  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38664638 tggacatcaacaaagtaacaattgtcttccaatttcctt 38664676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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