View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_13 (Length: 649)
Name: NF19192_low_13
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 631
Target Start/End: Complemental strand, 15802422 - 15801802
Alignment:
| Q |
11 |
cacagaacaaaatacagaaattgttatgtccaacaaaattcttggaatggttactgnnnnnnnttcaaccatgaaaacgtcaaaacacaacatgacttgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15802422 |
cacagaacaaaatacagaaattgttatgtccaataaaattcttggaatggttaatgaaaaaaattcaaccatgaaaatgtcaaaacacaacatgacttgt |
15802323 |
T |
|
| Q |
111 |
actaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagtatttgccagaatt |
210 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15802322 |
actacaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagtatttgcgagaatt |
15802223 |
T |
|
| Q |
211 |
caacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattctgacttaggcacaatatctaaccataa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15802222 |
caacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattctgacttaggcacaatatctaaccacaa |
15802123 |
T |
|
| Q |
311 |
tatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaac |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15802122 |
catcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaac |
15802023 |
T |
|
| Q |
411 |
actgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacag |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15802022 |
actgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacacaaaccagaatacgacag |
15801923 |
T |
|
| Q |
511 |
gaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgat |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15801922 |
gaaaagttattgtaacaccatcatggaatataaccggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacatgatgagtttgat |
15801823 |
T |
|
| Q |
611 |
acgcaaagtgactacagaatc |
631 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15801822 |
acgcaaagtgactacagaatc |
15801802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 75 - 629
Target Start/End: Complemental strand, 15794559 - 15794005
Alignment:
| Q |
75 |
tcaaccatgaaaacgtcaaaacacaacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcac |
174 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
15794559 |
tcaacaatgaaaacgtcaccacacaacatgacttatactacaaggtttctaagcttcattctccttaatctcctcctcttcatgatcctaacaactgcac |
15794460 |
T |
|
| Q |
175 |
aatcaccattttacttgtacagtatttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaa |
274 |
Q |
| |
|
||||||||||||| |||| ||| ||||| |||||||||| |||||| ||| ||| |||| ||||||||||||||||| | | |||| ||||||| || |
|
|
| T |
15794459 |
aatcaccattttatatgtatagtgtttgcgagaattcaactcaaaaaatactcaacgcttcgtaccaatccaacgttaacaactttctgtcatggacaac |
15794360 |
T |
|
| Q |
275 |
ctcagattctgacttaggcacaatatctaaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggt |
374 |
Q |
| |
|
|| ||||||| | | ||| |||||||||| || | ||||| ||||||||||| | |||||||||| | ||||||||||| || | |||||| ||| |
|
|
| T |
15794359 |
atcggattctgccaaacaaacagtatctaaccacaacaccatagttagcaacaacaacaatgatcatgatacggtttatgggttctatgattgtcggggt |
15794260 |
T |
|
| Q |
375 |
gacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatg |
474 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||| ||||||||| || || || |||||| |||||||| || ||| |||||||||||||| |
|
|
| T |
15794259 |
gacatcacaggaagtttctgtcaattttgtatcaacactgttgttagagatattgcaaaatattgtcccaacagtgtctcagctatgatatggtatgatt |
15794160 |
T |
|
| Q |
475 |
tatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacaga |
574 |
Q |
| |
|
||||| ||||||||||||||||||||||| | | |||| |||||||||||| |||||||||||| |||| ||||| | || |||||| ||||| ||||| |
|
|
| T |
15794159 |
tatgcatcatgggttacactaaccagaatccctcgggaagagttattgtaactccatcatggaatgtaaccggatctaaaatcgttaaagactcgacaga |
15794060 |
T |
|
| Q |
575 |
acttgggaaagctgagaataacattatgagtttgatacgcaaagtgactacagaa |
629 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
15794059 |
acttgcgaaatctgagaataacatgatgagtttgatacgaaaagtgacgacagaa |
15794005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 94 - 627
Target Start/End: Complemental strand, 15807958 - 15807425
Alignment:
| Q |
94 |
aacacaacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgta |
193 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||||||||| ||||| | ||| ||||||||||||||| |||| |
|
|
| T |
15807958 |
aacacaacatgacttgtactacaaggtttctaagcttcattctacttcatcacttcctcttcatgacgctaacgaatgcgcaatcaccattttacatgta |
15807859 |
T |
|
| Q |
194 |
cagtatttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattctgacttaggc |
293 |
Q |
| |
|
|||| |||||||||||| || ||||||||| | ||||||||||| |||||||||||||| | | || | ||||||| || || ||||||| | ||| |
|
|
| T |
15807858 |
cagttattgccagaattctactgaaaaaacagtcaacacttcatatcaatccaacgttaacaactttttgtcatggacaacatcggattctgccaaagga |
15807759 |
T |
|
| Q |
294 |
acaatatctaaccataatatcataggtagcaacaacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttct |
393 |
Q |
| |
|
|| |||||||||| || | ||||||||||||||||||| || || |||| | ||||||||||| || | ||||| |||| | |||| ||||||||| |
|
|
| T |
15807758 |
actgtatctaaccacaacaccataggtagcaacaacagcaattataatgatacggtttatgggttctatgattgtctaggtcctaacacaagaagtttct |
15807659 |
T |
|
| Q |
394 |
gccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacac |
493 |
Q |
| |
|
| | ||| || |||||||||||| |||||||||| || || |||||| |||||||| |||||| | |||||||||||||||||| |||||||||| || |
|
|
| T |
15807658 |
gtcaattttgcatcaacactgcttttagagaaattgcaaaatattgtcccaacagtgtctcggctattatatggtatgatgtatgcatcatgggttatac |
15807559 |
T |
|
| Q |
494 |
taaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaat |
593 |
Q |
| |
|
|||||||||| | |||||| |||| || || ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15807558 |
taaccagaatccctcaggaagagtttttctagaaccatcatggaatgtaaccggatccaaaaacgttaaggactcaacagaacttgggaaagctgagaat |
15807459 |
T |
|
| Q |
594 |
aacattatgagtttgatacgcaaagtgactacag |
627 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||| |
|
|
| T |
15807458 |
agcatgacgagtttgatacgcaaagtgactacag |
15807425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 99 - 586
Target Start/End: Complemental strand, 15815823 - 15815327
Alignment:
| Q |
99 |
aacatgacttgtactaaaaggtttctaagcttcattttccttcatttcttcctcttcatgatcctaacaactgcacaatcaccattttacttgtacagta |
198 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | |||||| | || ||||||| | |||||| |||||||||||||| |||| || | | |
|
|
| T |
15815823 |
aacatgacttgtactgcaaggtttctaagcttcattctacttcatatttttctcttcac---cttaacaaatgcacaatcaccatattacaggttaaatt |
15815727 |
T |
|
| Q |
199 |
tttgccagaattcaacagaaaaaacacttaacacttcataccaatccaacgttaatagccttctctcatggataaactcagattctgacttaggcacaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||| |||||||||| | ||||||| |||| || | |
|
|
| T |
15815726 |
tttgccagaattcaacagaaaaaacaaacaacacatcataccgatccaacgttagaaatcttcttctatggataaacactgattctgcaacaggctcagt |
15815627 |
T |
|
| Q |
299 |
atctaaccataatatcataggtagcaacaa------cagcgatgatcatgaca---atgtt---tatgggttatacggttgtcgaggtgacatcacagga |
386 |
Q |
| |
|
||||||||| | |||| |||||||| |||| ||||| |||| ||||| ||||| || |||| |||||| |||||| | |||||| |
|
|
| T |
15815626 |
atctaaccacatagccataaacagcaacaaaactaacagcaatgataatgatggtgatgttgtgtatggattctacgattgtcgtggtgacgtaacagga |
15815527 |
T |
|
| Q |
387 |
agtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgg |
486 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||||||| ||||||||| ||||||| || | || |||||| ||||||||||||| |||| ||||| | |
|
|
| T |
15815526 |
agtttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcgtctcggctatgatatggtatgacatatgtgtcatcg |
15815427 |
T |
|
| Q |
487 |
gttacactaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagc |
586 |
Q |
| |
|
|||| || |||| ||||| |||||||| || ||| || |||||||||||| |||| ||| ||| |||| ||||||||||| ||||||| |||||| |
|
|
| T |
15815426 |
gttattctgaccataatacatcaggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaacacgaaggactcaactgaacttgagaaagc |
15815327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 365 - 448
Target Start/End: Complemental strand, 15700313 - 15700230
Alignment:
| Q |
365 |
ttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacag |
448 |
Q |
| |
|
|||||| | |||| |||||||||||||||| | ||| ||||||||||||||||| | |||||| ||||||||||||| |||||| |
|
|
| T |
15700313 |
ttgtcgggctgacgtcacaggaagtttctgtcaattttgtatcaacactgctgtcaaagaaattgctcaacgttgtcttaacag |
15700230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 586
Target Start/End: Complemental strand, 15724886 - 15724810
Alignment:
| Q |
510 |
ggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagc |
586 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| ||||| |||| | ||| ||||||||||||||| |||||||||| |
|
|
| T |
15724886 |
ggaaaagttgtcgtaacaccgtcatggaatattactggctccaatagcgtaaaggactcaacagaaattgggaaagc |
15724810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University