View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19192_low_131 (Length: 214)

Name: NF19192_low_131
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19192_low_131
NF19192_low_131
[»] chr1 (3 HSPs)
chr1 (18-199)||(14889203-14889384)
chr1 (28-123)||(14883588-14883685)
chr1 (154-199)||(14883688-14883733)
[»] chr7 (7 HSPs)
chr7 (40-199)||(27243695-27243861)
chr7 (27-123)||(27249715-27249811)
chr7 (35-101)||(27323492-27323564)
chr7 (137-188)||(27249642-27249692)
chr7 (27-61)||(27314231-27314265)
chr7 (68-100)||(27236731-27236763)
chr7 (28-68)||(27302232-27302272)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 14889203 - 14889384
Alignment:
Q  18 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14889203 tgaaacatggaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaa 14889302  T
Q  118 ttaagcatcnnnnnnnnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattact 199  Q
    |||||||||         |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  14889303 ttaagcatctttttttttataagagtaaagtcatcctctttattctgtcgatattggttattaccgaaaaccaattattact 14889384  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 14883588 - 14883685
Alignment:
Q  28 aatattttgatctgaaacatttcagattttattttaattata--tatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 123  Q
    |||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||   |||||||||||    
T  14883588 aatattttgatctgaaacatttcaaattttatttttattatatatatagtgatccctagtggggattcagttacaacttacaactgaagaaattaagc 14883685  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 14883688 - 14883733
Alignment:
Q  154 tctttattctgtcggtattggttattaccaaaaactaattattact 199  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  14883688 tctttattctgtcggtattggttattaccaaaaaccaattattact 14883733  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 27243861 - 27243695
Alignment:
Q  40 tgaaacatttcagattttatttta-----attatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc--atcnnnnnn 132  Q
    |||||||||||||||||||||| |     ||||||||| |||||||||||||||||||||||||||| ||| |||| |||| |||||||  | |          
T  27243861 tgaaacatttcagattttatttaaggaaaattatatattgtgatccctagtggggattcagttacaacttataaccggagagattaagccaaactttgtt 27243762  T
Q  133 nnnataagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaactaattattact 199  Q
        |||||||||| || ||| ||||| |||| |||||||||||||||||| |||| ||||||||||    
T  27243761 tttttaagagtaaaatcttcccctttactctgccggtattggttattaccataaaccaattattact 27243695  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 27249811 - 27249715
Alignment:
Q  27 gaatattttgatctgaaacatttcagattttattttaattatatatagtgatccctagtggggattcagttacaagttacaaccagagaaattaagc 123  Q
    |||||||| ||||||||| |||| || ||| | |||||||||| | |||||||| |||||||||||||||||||| ||||||||  |||||||||||    
T  27249811 gaatatttcgatctgaaaaatttaaggtttaaatttaattatacacagtgatccatagtggggattcagttacaacttacaaccgtagaaattaagc 27249715  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 27323564 - 27323492
Alignment:
Q  35 tgatctgaaacatttcagattttattttaattata-------tatagtgatccctagtggggattcagttacaa 101  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||    
T  27323564 tgatctgaaacatttcagattttattttaattatatgaatagtatagtgatccctagt-gggattcagttacaa 27323492  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 27249692 - 27249642
Alignment:
Q  137 taagagtaaagtcatcctctttattctgtcggtattggttattaccaaaaac 188  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  27249692 taagagtaaagtcatcc-ctttattctgtctgtattggttattaccacaaac 27249642  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 27314265 - 27314231
Alignment:
Q  27 gaatattttgatctgaaacatttcagattttattt 61  Q
    ||||||||||| |||||||||||||||||||||||    
T  27314265 gaatattttgacctgaaacatttcagattttattt 27314231  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 27236763 - 27236731
Alignment:
Q  68 tatatagtgatccctagtggggattcagttaca 100  Q
    |||||||||||||||||||||||| ||||||||    
T  27236763 tatatagtgatccctagtggggatccagttaca 27236731  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 27302272 - 27302232
Alignment:
Q  28 aatattttgatctgaaacatttcagattttattttaattat 68  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  27302272 aatattttgaaatgaaatatttcagattttattttaattat 27302232  T

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