View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_133 (Length: 212)
Name: NF19192_low_133
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_133 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 22557185 - 22557371
Alignment:
| Q |
15 |
atgaataatacataatatatgagataaagatatattgccaaaaattgttacatttataagtcaaggtgtgagttggaatccgcagtacc-----ttgttt |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
22557185 |
atgaataatgcataatatatgagataaagatagattgccaaaagttgttacatctataagttggggtgtgagttggaatccacagtaccttaccttgttt |
22557284 |
T |
|
| Q |
110 |
gtatttagtctgtgtaagttttcatattgaattatttgaaaagagtgtaatcaactcactttaagagaaaactttgatattagtgtt |
196 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22557285 |
gtatttagtctgtgtaagttttcgtattgaattatttgaaaagagtgtaaacaactcactttaagagaaaactttgacattagtgtt |
22557371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University