View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_14 (Length: 649)
Name: NF19192_low_14
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 19 - 649
Target Start/End: Complemental strand, 41482011 - 41481383
Alignment:
| Q |
19 |
tgttgaaattgtgtttttgtcattttgtgcagtgtagtacgaatcatgagcacaaggtggtggtgtatttgctctgcctgcgtttgtgtgcgcgcgcagc |
118 |
Q |
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| T |
41482011 |
tgttgaaattgtgtttttgtcattt-----agtgtagtacgaatcatgagcacaaggtggtggtgtatttgctctgcctgcgtttttgcgcgcgcgcagc |
41481917 |
T |
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| Q |
119 |
atcagcaagaaacgtgatgaccaagcactgtttctttcaaatactattctatgctcttgttatgctactgtttgtgcaattcttcaatcaaaataggaca |
218 |
Q |
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| T |
41481916 |
atcagcaagaaacgtgatgaccaagcactgtttctttcaaatactattctatgctcttgttatggtactgtttgtgcaattcttcaatcaaaataggaca |
41481817 |
T |
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| Q |
219 |
cgtggaaattaatacattcaaattaattatctcttttt-atattattagaatcacagagtggaatagtatatccattttggataaatttgcgctacagct |
317 |
Q |
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| T |
41481816 |
cgtggaaattaatacattcaaattaattatctctttttaatattattagaatcacagagtggaatagtatatccattttggataaatttgcgctacagct |
41481717 |
T |
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| Q |
318 |
taaatttaataaatcctgttggcnnnnnnncgaaataccttttaattgttgcccaaattaaatttagtgactaacaacaatcacataagccaacaaaatg |
417 |
Q |
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| T |
41481716 |
taaatttaataaatcctgttggctttttttcgatataccttttaattgttgcccaaattgaatttattgactaacaacaatcacataagccaacaaaatg |
41481617 |
T |
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| Q |
418 |
tagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacgcata---ttcttcaacatgattttggtttctatttgataagtttctagta |
514 |
Q |
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| T |
41481616 |
tagaatacattgaaaaaattctaacaagtggagtaaaatatagagggacacatattcttcttcaacatgattttggtttctatttgataagtttctagta |
41481517 |
T |
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| Q |
515 |
gcaaatgttatgatttagttcacataaccaatctctatcaacataatcttgaaacacnnnnnnnnatgtaatccccaatcttcatgtccttgtttctatt |
614 |
Q |
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| T |
41481516 |
gcaaatgttatgatttagttcacataaccaatctctatcaacataatcttgaaacac-tttttttatgcaatccccaatcttcatgtccttgtttctatt |
41481418 |
T |
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| Q |
615 |
agcgtagcttttgtttcttgcatcgtaagcaatct |
649 |
Q |
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| T |
41481417 |
agcgtagcttttgtttcttgcatcgtaagcaatct |
41481383 |
T |
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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 44507007 - 44506951
Alignment:
| Q |
202 |
tcaatcaaaataggacacgtggaaattaatacattcaaattaattatctctttttat |
258 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44507007 |
tcaatcaatataggacatgtggaaattaatacattcaaattaattatctctttttat |
44506951 |
T |
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