View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_15 (Length: 635)
Name: NF19192_low_15
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 60 - 534
Target Start/End: Original strand, 38021809 - 38022283
Alignment:
| Q |
60 |
cattaatcaatatcaaattgcttaactctacctttcttcttaacaattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtg |
159 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38021809 |
cattaatcaatatcaaattgcttaacactacctttcttcttaacaattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtg |
38021908 |
T |
|
| Q |
160 |
ttggagtggtggaggctttgaaggatcaaggaatatgcagatggaacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38021909 |
ttggagtggtggaggctttgaaggatcaaggaatatgcagatggaacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtc |
38022008 |
T |
|
| Q |
260 |
tcatgccaacaacaaaattccttccacaaaattgagggacgagaaatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38022009 |
tcatgccaacaacaaaattccttccacaaaattgagggacgagaaatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggt |
38022108 |
T |
|
| Q |
360 |
cccaactaaagaaagaaacattttggattatgcaaaggaagatccaatcaaacacaagagtttttggtcaagattaattgagtttgaaacaagtgaatga |
459 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38022109 |
cccaactaaagaaagaaacattttgaattatgcaaaggaagatccaatcaaacacaagagtttttgatcaagattaattgagtttgaaacaagtgaatga |
38022208 |
T |
|
| Q |
460 |
atcatcctctttattgctttggaacttgaagtggtcttggaagtgattcaatttttgcatggatagaaatttgtg |
534 |
Q |
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| T |
38022209 |
atcatcctctttattgctttggaacttgaagtggtcttggaagtgattcaatttttgcatggatagaaatttgtg |
38022283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 104 - 521
Target Start/End: Original strand, 38033749 - 38034169
Alignment:
| Q |
104 |
aattaatacaatgagttcaagaagccaagcatggaaatggagtgtggcaacaagtgttggagtggtggaggctttgaaggatcaaggaatatgcagatgg |
203 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
38033749 |
aattaatacaatgagttcaagaagccgagcttggacgtggagtgtggcaacaagtgttggagttgtggaggctttgaaagatcaaggaatatgcagatgg |
38033848 |
T |
|
| Q |
204 |
aacagtgttataagatcagcacaacagcattctaaacataacatgaggtctttgtctcatgccaacaacaaaattccttccacaaaattgagggacgaga |
303 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||||||| || |||| || ||||||||||| || | |
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| T |
38033849 |
aacagtgttataagatcagcacaacaacatgctaaacataatatcaggtctttgtctcatgccaacaacaaagtttcttcaaccaaattgagggatgaca |
38033948 |
T |
|
| Q |
304 |
aatccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaagaaagaaacattttggattat----gcaaaggaa |
399 |
Q |
| |
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||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||| ||||| || | |||| |
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| T |
38033949 |
aatccaaacagtcggaggaatctttgagaacggtcatgttcttgagttgctggggtcccaactaaagatattaaca-tttcaattatgctagctagggaa |
38034047 |
T |
|
| Q |
400 |
gatccaatcaaacacaagagtttttggtcaagattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaagtggtcttgg |
499 |
Q |
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||||| ||||| ||||| ||||||| |||||||||||||||| | ||||||||||| ||||||||| ||| || ||||||| | |||||||||||||| |
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| T |
38034048 |
gatcctatcaagcacaaaagttttttatcaagattaattgagtctaaaacaagtgaaagaatcatcccttttgtttctttggatcatgaagtggtcttgg |
38034147 |
T |
|
| Q |
500 |
aagtgattcaatttttgcatgg |
521 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38034148 |
aagtgattcaatttttgcatgg |
38034169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 38046592 - 38046648
Alignment:
| Q |
309 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaac |
365 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||| || || |||||||||||| |
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| T |
38046592 |
aagcaatcagaggaatctttgagaacagtcatgtacttaagctgttggggtcccaac |
38046648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 38028444 - 38028499
Alignment:
| Q |
309 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
364 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||| |
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| T |
38028444 |
aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa |
38028499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 38043084 - 38043139
Alignment:
| Q |
309 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
364 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||| |
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|
| T |
38043084 |
aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa |
38043139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 38045086 - 38045141
Alignment:
| Q |
309 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
364 |
Q |
| |
|
||||| || |||||||||||||| | ||||||| ||||||||||||||||||||| |
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|
| T |
38045086 |
aagcaatcggaggaatctttgaggaaggtcatgtacttgagttgctggggtcccaa |
38045141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 38067431 - 38067486
Alignment:
| Q |
309 |
aagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
364 |
Q |
| |
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||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||| |
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|
| T |
38067431 |
aagcaatcagaggaatctttgaggaaagtcatgtacttgagttgttggggtcccaa |
38067486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 37987372 - 37987426
Alignment:
| Q |
316 |
cagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaactaaag |
370 |
Q |
| |
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|||| |||||| | |||||||| |||| |||||||||||||||||| |||||||| |
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| T |
37987372 |
cagaagaatctcttagaactgtgatgtacttgagttgctggggtcctaactaaag |
37987426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 38031872 - 38031926
Alignment:
| Q |
307 |
ccaagcagtcagaggaatctttgagaactgtcatgttcttgagttgctggggtcc |
361 |
Q |
| |
|
|||| ||| ||||||| |||||||| |||||||||| |||||| ||||||||||| |
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|
| T |
38031872 |
ccaaacaggcagaggagtctttgaggactgtcatgtacttgagctgctggggtcc |
38031926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 38019190 - 38019239
Alignment:
| Q |
156 |
agtgttggagtggtggaggctttgaaggatcaaggaatatgcagatggaa |
205 |
Q |
| |
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||||||| ||| ||||| || || |||||||||||||||||||||||||| |
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| T |
38019190 |
agtgttgcagttgtggaagcattaaaggatcaaggaatatgcagatggaa |
38019239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 37993499 - 37993539
Alignment:
| Q |
150 |
gcaacaagtgttggagtggtggaggctttgaaggatcaagg |
190 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||| |
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|
| T |
37993499 |
gcaacaagtgttggattggtggagacattgaaggatcaagg |
37993539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 38003630 - 38003678
Alignment:
| Q |
316 |
cagaggaatctttgagaactgtcatgttcttgagttgctggggtcccaa |
364 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||| || ||||||||||| |
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|
| T |
38003630 |
cagaggagtctttgaggactgtcatgtacttgagctgttggggtcccaa |
38003678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 38021760 - 38021788
Alignment:
| Q |
13 |
tcatcaaccattaatcaatatctcttgtc |
41 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38021760 |
tcatcaaccattaatcaatatctcttgtc |
38021788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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