View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_16 (Length: 581)
Name: NF19192_low_16
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_16 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 401 - 581
Target Start/End: Complemental strand, 378506 - 378329
Alignment:
| Q |
401 |
ttcaaacgctcgatgagtcaactttggagcaatacagaaagaaaatgcttcaacatacttcaatcatcatcaaaaaccaaaacttttaaaacattacttc |
500 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
378506 |
ttcaaacgctcgatgagtcaactatggagcaatacagaaagaaaatgcttcaacatacttcaatcatca---aaaaccaaaacttttaaaacattacttg |
378410 |
T |
|
| Q |
501 |
aaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttccc |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
378409 |
aaatccacgctttcattctccgtaactctcttcataacaatcttcaccttcttaccaaattcatctcttcttccacttccc |
378329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 378639 - 378510
Alignment:
| Q |
15 |
atataatctgaaaactaccaaaagagagtttagttatatgaccggaacaaatgatatttttaggg---------------gagaagagggaagaagggaa |
99 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
378639 |
atataatctaaaaaccaccaaaagagagtttagttatatgaccggaacaaatgatatttttaggggaaaatagaacacgtgagaagagggaagatgggaa |
378540 |
T |
|
| Q |
100 |
aaaattaatccgaaaataaagaaactcttg |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |
|
|
| T |
378539 |
aaaattaatctgaaaataaagaaactcttg |
378510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 1607004 - 1606913
Alignment:
| Q |
488 |
aaaacattacttcaaatccacgctttcattctccgtaactctcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
579 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| | |||| | |||| || ||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1607004 |
aaaacattacttgaaatccacgctttctttcttcaaaactattttcaaaaaaatctcaaccctctcaccaaattcatctcttcttccacttc |
1606913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 579
Target Start/End: Complemental strand, 1107714 - 1107664
Alignment:
| Q |
529 |
tcttcataacaatcttcaccttctcaccaaattcatctcttcttccacttc |
579 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
1107714 |
tcttcaaaacaatctcaaccctctcaccaaattcatctcttcttccacttc |
1107664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 16862862 - 16862825
Alignment:
| Q |
184 |
gagaattgttattctcccatctgtttttgctcattccc |
221 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
16862862 |
gagaattgcttttctcccatctgtttttgctcattccc |
16862825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 29405080 - 29405118
Alignment:
| Q |
183 |
tgagaattgttattctcccatctgtttttgctcattccc |
221 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
29405080 |
tgagaattgttcttctcctatctgtttttgctcattccc |
29405118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 12750329 - 12750292
Alignment:
| Q |
184 |
gagaattgttattctcccatctgtttttgctcattccc |
221 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
12750329 |
gagaattgctcttctcccatctgtttttgctcattccc |
12750292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 32815751 - 32815788
Alignment:
| Q |
184 |
gagaattgttattctcccatctgtttttgctcattccc |
221 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
32815751 |
gagaattgttcttctcccatctgtttttggtcattccc |
32815788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 23252846 - 23252886
Alignment:
| Q |
183 |
tgagaattgttattctcccatctgtttttgctcattccctc |
223 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||| |
|
|
| T |
23252846 |
tgagtattgttcttctcccatctgcttttgctcattccctc |
23252886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University