View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_19 (Length: 530)
Name: NF19192_low_19
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 43021423 - 43020915
Alignment:
| Q |
1 |
taaagtgtaatcaattaatgaaattaaacaaatgaaatccagagtggggtctgtaaaatagaagcagacacacaaagttggggcccttgtggaagaatct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021423 |
taaagtgtaatcaattaatgaaattaaacaaatgaaatgcagagtggggtctgaaaaatagaagcagacacacaaagttggggcccttgtggaagaatct |
43021324 |
T |
|
| Q |
101 |
aaaaaaggtggataggagccaaattatgtttatatgttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggc |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021323 |
aaaaaaggtggataggagccatattatgtttatatgttatattcgtttctgcactactaccattcctcctgcgacttctttatgggaccaaatctctggc |
43021224 |
T |
|
| Q |
201 |
ataccaagaagccatataaaactgctagtaaaaatgctatctctggctatatatgcccccttcaaaagtatccaaaatcttccataaaagtataataact |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021223 |
ataccaagaagccatataaaactgctagtaaaaatgctatctctggccatatatgcccccttcaaaagtatccaaaatcttccataaaagtataataact |
43021124 |
T |
|
| Q |
301 |
gaatatcaccttttttaggcctt-gtttaaattttgaatacagtgtgaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccgatcctatt |
399 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43021123 |
gaatatcaccttttttaggccttagtttaaattttgaatacagtgttaaaaggtatattttcaatttcaaattaaaccaatcatgtaatccgatcctatt |
43021024 |
T |
|
| Q |
400 |
gctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaattttataggtattgtttca |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43021023 |
gctgtttattttaattaattattacatcaattcttaagacttaagattcttcaaccatttgattgtaagagatccagcaaagtttataggtattgtttca |
43020924 |
T |
|
| Q |
500 |
catgatcat |
508 |
Q |
| |
|
||||||||| |
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| T |
43020923 |
catgatcat |
43020915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 13675644 - 13675784
Alignment:
| Q |
136 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
235 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | |||||||||||||||| |||||||||| |||||| | |||| |
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| T |
13675644 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaattttctggcataccaagaaaccatataaaaatgctagcacaaat |
13675743 |
T |
|
| Q |
236 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
276 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
13675744 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
13675784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 19965075 - 19964935
Alignment:
| Q |
136 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
235 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | | ||| |||||||||| |||||||||| |||||| | |||| |
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| T |
19965075 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttttgggataccaagaaaccatataaaaatgctagcacaaat |
19964976 |
T |
|
| Q |
236 |
gctatctctggctatatatgcccccttcaaaagtatccaaa |
276 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19964975 |
gctatctctatctatatatgcccccttcaaaagtatccaaa |
19964935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 50805826 - 50805724
Alignment:
| Q |
136 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
235 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| | ||| |||||||||||| |||||||||| |||||| | |||| |
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| T |
50805826 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggaccaattttctagcataccaagaaaccatataaaaatgctagcacaaat |
50805727 |
T |
|
| Q |
236 |
gct |
238 |
Q |
| |
|
||| |
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|
| T |
50805726 |
gct |
50805724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 50870051 - 50870153
Alignment:
| Q |
136 |
gttatattcgtttcagcactactaccattcctcctgcgacttctttatgggaccaaatctctggcataccaagaagccatataaaactgctagtaaaaat |
235 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||||| ||||||||| || | | | | |||||||||| |||||||||| |||||| | |||| |
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|
| T |
50870051 |
gttatattcgtttctgcattactaccattcctcctgcaacttcattatgggactaatttttttgtataccaagaaaccatataaaaatgctagcacaaat |
50870150 |
T |
|
| Q |
236 |
gct |
238 |
Q |
| |
|
||| |
|
|
| T |
50870151 |
gct |
50870153 |
T |
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