View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19192_low_22 (Length: 512)
Name: NF19192_low_22
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Complemental strand, 36289281 - 36288794
Alignment:
| Q |
10 |
acataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaaccct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36289281 |
acataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaaccct |
36289182 |
T |
|
| Q |
110 |
tttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36289181 |
tttgcaccaaaaaaccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctcttacacccttttgaccaattcccactatt |
36289082 |
T |
|
| Q |
210 |
ccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36289081 |
ccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaac |
36288982 |
T |
|
| Q |
310 |
tcacacttcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaacc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36288981 |
tcacacttcttattaggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagttggaacc |
36288882 |
T |
|
| Q |
410 |
ttaccttatcactattttccaatgcttcatatacaaaatacctttctccattatcatttgtattaagcctaaaaccaaaaagataact |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36288881 |
ttaccttatcactattttccaatgcttcatatacaaaatacctttctccagtatcatttgtattaagcctaaaaccaaaaagataact |
36288794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 14521272 - 14521329
Alignment:
| Q |
11 |
cataggcagtacaagaactattcttcagacaatttccttcacaatccttactatcaac |
68 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||| ||||||||||||||| ||||||| |
|
|
| T |
14521272 |
cataagcagtacaagaagcattctccaaacaattaccttcacaatccttagtatcaac |
14521329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 47 - 447
Target Start/End: Original strand, 12096373 - 12096773
Alignment:
| Q |
47 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
146 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
12096373 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgcaccaaaaaaccatcttctccaccaaaactatt |
12096472 |
T |
|
| Q |
147 |
accacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
246 |
Q |
| |
|
|| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
12096473 |
actgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaacttttcacatcctttggctcaaacccttttatg |
12096572 |
T |
|
| Q |
247 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattcc |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | |
|
|
| T |
12096573 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaagctcactttgtaacacattgc |
12096672 |
T |
|
| Q |
347 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaa |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| ||| |
|
|
| T |
12096673 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaa |
12096772 |
T |
|
| Q |
447 |
a |
447 |
Q |
| |
|
| |
|
|
| T |
12096773 |
a |
12096773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University