View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_23 (Length: 504)
Name: NF19192_low_23
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 7927907 - 7928366
Alignment:
| Q |
1 |
agttggtagtgagagatgcatagtgattttggtgaggagaatcgcagtcagagcttcaccgaggatagaatcgtagttgcatgtgacataattgatacct |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
7927907 |
agttgttagtgagagatgcatagtgattttggtgaggagaatcgcagtgagagcttcaccgaggatagaatcgtagtcgcatgtgacagaattgatacct |
7928006 |
T |
|
| Q |
101 |
gtcgacgaatcagtgtcgagaacataagtttttgcgacagtgaaggtagacactagaaaattggtgagaaaaatcgtagtaaaagctataccgagtgtaa |
200 |
Q |
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| T |
7928007 |
gtcgacgaatcagtgtcgagaacagaagtttttgcgacagtgaaggtagacaatagaaaattggtgagaaaaatcgtagtaaaagctacaccgagtgtaa |
7928106 |
T |
|
| Q |
201 |
aaccgtagtcacctgtaacaaaattgattgtcaaaccgactctgagaagagaagcttcgtagctggtcgaggtggacatcggaagagaatcatcgtcgat |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
7928107 |
aaccgtagtcacctgtaacaaaattgattgtcgaaccggctctgagaagagaagcttcgtagctagtcgaggtggacatcggaagagaatcattgtcgat |
7928206 |
T |
|
| Q |
301 |
ggtggagccgacaccagaagataagcatcgctagctagcattaaccttaaaaagaacaagtgtgatgagtaagaatcgcagggaggaagtaaattccatg |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
7928207 |
ggtggagccgacaccagaagataagcatagctagctagcattaaccttaaaaagaacaagtgtgatgagcaagaatcgcagggaggaagaaaattccatg |
7928306 |
T |
|
| Q |
401 |
gcagtttgagaaacgtagattaagttttagaggagtgtcaaatctaatcaaatgaaaatg |
460 |
Q |
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| T |
7928307 |
gtagtttgagaaacgtagattaagttttagaggagtgtcaaatctaatcaaatgaaaatg |
7928366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 490
Target Start/End: Original strand, 7928356 - 7928384
Alignment:
| Q |
462 |
aaatgaaaatgtaagtgaagtatttgtat |
490 |
Q |
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| T |
7928356 |
aaatgaaaatgtaagtgaagtatttgtat |
7928384 |
T |
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