View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_24 (Length: 490)
Name: NF19192_low_24
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 13897697 - 13897317
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897697 |
ctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
13897598 |
T |
|
| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897597 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
13897498 |
T |
|
| Q |
201 |
aaaatattagaagagatttgcagggttgtgagtcaaagggaggatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaaga |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
13897497 |
aaaatattagaagagatttgcagggttgtgtgtcaaagggaggatattaataaggaagtgtttaatgattctttgagattcaagcctgaggagattaaga |
13897398 |
T |
|
| Q |
301 |
agatggattatttgcatgcagctctttcagaagctcttagattatatccttctgttcctgtggatcataaggaggtaataa |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13897397 |
agatggattatttgcatgcagctctttcagaagctcttagattatatccttctgttcctgtggattgtaaggaggtaataa |
13897317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 13887524 - 13887904
Alignment:
| Q |
12 |
gaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtg |
111 |
Q |
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||||| |||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
13887524 |
gaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtg |
13887623 |
T |
|
| Q |
112 |
taaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattaga |
211 |
Q |
| |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
13887624 |
taagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattaga |
13887723 |
T |
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| Q |
212 |
agagatttgcagggttgtgagtcaaagggagg------atattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatg |
305 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13887724 |
agagatttgcagggttgtgagtcaaagggaggatattaatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatg |
13887823 |
T |
|
| Q |
306 |
gattatttgcatgcagctctttcagaagctcttagattatatccttctgttcctgtggatcataaggaggtaataatagtt |
386 |
Q |
| |
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| |||||||||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||| |||| |
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| T |
13887824 |
ggttatttgcatgctgctctttcagaaactcttagattgtatccttctgttcctatggatcataaagaggtaataaaagtt |
13887904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 7295729 - 7295489
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| | |||| |
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| T |
7295729 |
ctttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataag--tgtgag |
7295632 |
T |
|
| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttc---agttgctttaagctggtttttctggttggttgatcagaatcatgaagttgag |
197 |
Q |
| |
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|||||| ||| | |||||||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| ||||||| ||| ||||| | ||| |
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| T |
7295631 |
ggatatatgtttgaatttcatattagccgggagagacacttcttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggag |
7295532 |
T |
|
| Q |
198 |
gagaaaatattagaagagatttgcagggttgtgagtcaaagggagg |
243 |
Q |
| |
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|| |||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
7295531 |
gaaaaaa---tagtagagatttgcagggtggtgagtcaaagggagg |
7295489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 7291781 - 7291699
Alignment:
| Q |
10 |
atgaagacgataaggaaaaa--tcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataa |
91 |
Q |
| |
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||||||| |||||||||||| || |||| || || ||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
7291781 |
atgaagatgataaggaaaaaaatcagattcgtaaa-tgtgtttatgaggcttaaggatgagaatgaaaattcatattcagataa |
7291699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 1034754 - 1034388
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034754 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
1034655 |
T |
|
| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1034654 |
ggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggag |
1034555 |
T |
|
| Q |
201 |
aaaatattagaagagatttgcagggttgtgagtcaaagggaggatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaaga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||| || ||||| | |||| |||||| ||| ||||| | | |||||||||||| |
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| T |
1034554 |
aaaatattagaagaaatttgcagggt------------ggtggatatcaagaaggatgagtttgatgattgtttgagatttaggtcacaggagattaaga |
1034467 |
T |
|
| Q |
301 |
agatggattatttgcatgcagctctttcagaagctcttagattatatccttctgttcctgtggatcataaggaggtaat |
379 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||| |||||||||||| |
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|
| T |
1034466 |
agatggattatttgcatgctgctctttcagaagctcttagattgtacccttctgtgcctgtggatcgtaaggaggtaat |
1034388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 33 - 379
Target Start/End: Complemental strand, 28667002 - 28666656
Alignment:
| Q |
33 |
gatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctggga |
132 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||| ||| ||||||||| |
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| T |
28667002 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
28666903 |
T |
|
| Q |
133 |
gagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagagatttgcagggttgtgag |
232 |
Q |
| |
|
||||||||||||| || ||||| || |||||||| ||||| ||||||||||||||||||| |||||||| |||||||||||||| |||| ||| ||||| |
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|
| T |
28666902 |
gagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtgag |
28666803 |
T |
|
| Q |
233 |
tcaaagggaggatattaataaggaagtgtttaatgattctttaagattcaaacctgaggagattaagaagatggattatttgcatgcagctctttcagaa |
332 |
Q |
| |
|
||| || | ||||| || ||||||| ||| | ||||||| | ||| | ||||| ||||| || |||||||| ||||||||||| | | || ||| |
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|
| T |
28666802 |
tcagagaaatgatataaagaaggaagaatttgaaaattctttgatatttaggcctgaagagataaaaaagatggactatttgcatgcttgtttatctgaa |
28666703 |
T |
|
| Q |
333 |
gctcttagattatatccttctgttcctgtggatcataaggaggtaat |
379 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
28666702 |
actctcagattatatccttctgttcctgttgatcacaaggaggtaat |
28666656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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