View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19192_low_25 (Length: 488)
Name: NF19192_low_25
Description: NF19192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19192_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 42 - 483
Target Start/End: Original strand, 35706579 - 35707020
Alignment:
| Q |
42 |
gtcttgcagttacccttacttgccaattaattactacatgaggaagtctatataccaaagaacctcaaaactagctcttataacatataaatacattatt |
141 |
Q |
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| T |
35706579 |
gtcttgcagttacccttacttgccaattaattactacataaggaattctatataccaaagaacctcaaaactagctcttataatatataaatacattatt |
35706678 |
T |
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| Q |
142 |
gagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaactttccttctccatctctaactccctgatgtgataaatcagctt |
241 |
Q |
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| T |
35706679 |
gagcttctgattggttatacctctaaatatcaatgctcacacaagaattgctccaactttccttctccatctctaactccctgatgtgataaatcagctt |
35706778 |
T |
|
| Q |
242 |
tgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtcaatatgtaagcagccacaaagcaattctttacatttgtcaata |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35706779 |
tgttaagtaaattggtgtgcagttgatttaaaatttaaatacccttcatcgatagtcaatatgtaggcagccacaaagcaattctttacatttgtcaata |
35706878 |
T |
|
| Q |
342 |
acagaaaatggtcacccccacttcaagttattcctccaacaccaaagtatctgttttaaacctccacatggacctagtcttgctcaccaaaaattattac |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35706879 |
acagaaaatggtcacccccacttcaagttattcctccaacaccaaagtatctgttttaaacctccacatggacctagtcttgctcaccaaaaattattac |
35706978 |
T |
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| Q |
442 |
aagagcaagctccattaaggaagtggtggaatctcatgttat |
483 |
Q |
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| T |
35706979 |
aagagcaagctccattaaggaagtggtggaatctcatgttat |
35707020 |
T |
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